PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023542830.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family YABBY
Protein Properties Length: 172aa    MW: 18779.1 Da    PI: 8.2943
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023542830.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY149.43.6e-4691561163
           YABBY   1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesasts 95 
                     +d+++ s+++Cyv+CnfCnt+lav +P   l+ +vtv+CGhC++l  ++ +           l+ +    + + l ++++   s+++++ ++++s
  XP_023542830.1   9 MDLVQPSDHLCYVKCNFCNTVLAVGIPCRRLLDTVTVKCGHCSNLSFLSTRPP---------LQGQC---IDHPLSFQSQVGFSTDIRKGASTSS 91 
                     578999*************************************9855333332.........22222...2333444444444455555555444 PP

           YABBY  96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163
                      ss   s++  +e+p +  v++PPek+ r Psaynrf+keeiqrika+nP+i hreafsaaaknWa +
  XP_023542830.1  92 SSS---SSSMANESPSANFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARY 156
                     444...5566778888899***********************************************76 PP
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    
MSSEDKSSMD LVQPSDHLCY VKCNFCNTVL AVGIPCRRLL DTVTVKCGHC SNLSFLSTRP  60
PLQGQCIDHP LSFQSQVGFS TDIRKGASTS SSSSSSSMAN ESPSANFVVK PPEKKHRLPS  120
AYNRFMKEEI QRIKAANPEI PHREAFSAAA KNWARYIPNS ADGSASGTHD NE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.12e-67YABBY family protein