PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023542831.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 353aa MW: 39947.4 Da PI: 7.1526

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023542831.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51	3.3e-16	90	135	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l ++v+++G+ +W++Ia+++ gR++k+c++rw++ XP_023542831.1 90 RGHWRPAEDTKLRELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 135 899***************************.*********996 PP
2	Myb_DNA-binding	55.3	1.5e-17	142	185	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r +++eE+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+ XP_023542831.1 142 RRVFSEEEEERLMQAHRIYGNK-WAMIARLFP-GRTDNAVKNHWHV 185 5679****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MGMLDDDHDD HDDFGVGVEE SLNLDLNRAI VSSSQESSEV LENGRGFWNF PFSCESITRS 60 SETDFSDGFV ENMNEPLNKA SGAQSRLCAR GHWRPAEDTK LRELVALYGP QNWNLIAEKL 120 EGRSGKSCRL RWFNQLDPRI NRRVFSEEEE ERLMQAHRIY GNKWAMIARL FPGRTDNAVK 180 NHWHVIMARK YREQSRSYRR RKLSQSVYRK MEEDLSFLVL PKEQDNRHPT ARSPFGAVDY 240 GFLTQMATAG GESMNSHHRL NQPFFSSCSP LSTLNVLPDP KGRFWEGTGH GFVEPRSHRQ 300 YQPYNTAALA SNDGVGGSQV ATSHVLRGGS SSVTVETTKQ APPFIDFLGV GAT

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MGMLDDDHDD HDDFGVGVEE SLNLDLNRAI VSSSQESSEV LENGRGFWNF PFSCESITRS  60
SETDFSDGFV ENMNEPLNKA SGAQSRLCAR GHWRPAEDTK LRELVALYGP QNWNLIAEKL  120
EGRSGKSCRL RWFNQLDPRI NRRVFSEEEE ERLMQAHRIY GNKWAMIARL FPGRTDNAVK  180
NHWHVIMARK YREQSRSYRR RKLSQSVYRK MEEDLSFLVL PKEQDNRHPT ARSPFGAVDY  240
GFLTQMATAG GESMNSHHRL NQPFFSSCSP LSTLNVLPDP KGRFWEGTGH GFVEPRSHRQ  300
YQPYNTAALA SNDGVGGSQV ATSHVLRGGS SSVTVETTKQ APPFIDFLGV GAT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69560.1	5e-76	MYB family protein