PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023543014.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MIKC_MADS
Protein Properties Length: 233aa    MW: 27051.1 Da    PI: 10.2675
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023543014.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.98.4e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+
  XP_023543014.1  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYST 59
                    79***********************************************96 PP
2K-box103.82.1e-34801746100
           K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                       +++++ + +++ e+akLk+++e Lq+++Rh++GedL+sL lkeLq++eqqL+++lk+iR++Kn+l++e+i+el kk k+lqe+n++L kk++e
  XP_023543014.1  80 LIANDNQSNGNWSLEHAKLKARVEVLQKNHRHFMGEDLDSLALKELQNIEQQLDSALKQIRARKNQLMHESISELHKKDKALQEQNNMLAKKIKE 174
                     5557788899**********************************************************************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFST KGKLFEYSTD  60
SCMEKILERY ERYSYAERRL IANDNQSNGN WSLEHAKLKA RVEVLQKNHR HFMGEDLDSL  120
ALKELQNIEQ QLDSALKQIR ARKNQLMHES ISELHKKDKA LQEQNNMLAK KIKEKEKAQA  180
QNPPSEQQQQ QEYSHGVSPL LLPQPFPSLA MTTTLLPVPI PQLERQRRGC QLR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.11e-86MIKC_MADS family protein