PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023543197.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 351aa MW: 38465.1 Da PI: 5.4466

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023543197.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.2	1.7e-14	176	222	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ ++f L l+P++ kK++Ka+iL A+ YIk+Lq XP_023543197.1 176 DHVIAERKRREKLSQRFVALSALIPHL-----KKMDKASILGDAITYIKDLQ 222 6999*********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence
MEISSAKWLS DMDLESAFMD DFEMNPFECT LDELSFQTFS DESHTSHLDL ENSVQTPPSP 60 PPPAKQPRTS GSWNNSSTTR QIASMAASSS SSHIISFGNS HSSSPPASNK LVGNNGNYSN 120 VKPKFEIGCE GNIDLSSAIP QGSYENNPNG SPKYDGVGMK RSASAMNYRT ALVAQDHVIA 180 ERKRREKLSQ RFVALSALIP HLKKMDKASI LGDAITYIKD LQDRLKVADE EAAKSRVESV 240 VFVNRSEDVS AVVEDDSSEE NSSSDRAIPE IEARVSGKDV LLKIHGKKCK GCLSNILNHI 300 EELNLTVLNS SALPFGNFRI DITIIAQMGD GFSMTVKELV QKLRQTCLQF V

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence

MEISSAKWLS DMDLESAFMD DFEMNPFECT LDELSFQTFS DESHTSHLDL ENSVQTPPSP  60
PPPAKQPRTS GSWNNSSTTR QIASMAASSS SSHIISFGNS HSSSPPASNK LVGNNGNYSN  120
VKPKFEIGCE GNIDLSSAIP QGSYENNPNG SPKYDGVGMK RSASAMNYRT ALVAQDHVIA  180
ERKRREKLSQ RFVALSALIP HLKKMDKASI LGDAITYIKD LQDRLKVADE EAAKSRVESV  240
VFVNRSEDVS AVVEDDSSEE NSSSDRAIPE IEARVSGKDV LLKIHGKKCK GCLSNILNHI  300
EELNLTVLNS SALPFGNFRI DITIIAQMGD GFSMTVKELV QKLRQTCLQF V

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	181	186	ERKRRE
2	182	187	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22760.1	9e-48	bHLH family protein