PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023543261.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MIKC_MADS
Protein Properties Length: 234aa    MW: 26512.6 Da    PI: 9.7449
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023543261.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.42.8e-261059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri+n+  rqvtfskRr+g++KKA+ELS+LCdae a+iifss+gk ye++s
  XP_023543261.1 10 RIDNSASRQVTFSKRRKGLIKKAKELSILCDAELALIIFSSSGKQYEFAS 59
                    8***********************************************86 PP
2K-box738.5e-25841701298
           K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     ++ + +q+e++ L++++ +Lq+++R+l+Ge+L  Ls+k+L++Le+qLe sl++iR kK+++l ++i+el +k   ++++n +L +k+
  XP_023543261.1  84 SDVKLWQKEVSALRQQLLKLQENNRKLMGEQLYGLSIKDLNSLESQLEFSLQSIRIKKEQILNDEIKELNRKGILMHQQNVELANKV 170
                     56688******************************************************************************9997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    
MGRGKIVIRR IDNSASRQVT FSKRRKGLIK KAKELSILCD AELALIIFSS SGKQYEFAST  60
SIESVIEKYN TRKEEDELLL NPISDVKLWQ KEVSALRQQL LKLQENNRKL MGEQLYGLSI  120
KDLNSLESQL EFSLQSIRIK KEQILNDEIK ELNRKGILMH QQNVELANKV NLFCQENIEL  180
HRKVYGHDSR SEMSVATGNP LIPYGIISAA AAGPIGGDAG LRMPIHLQLS PREQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.13e-74MIKC_MADS family protein