PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023543302.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family ARF
Protein Properties Length: 891aa    MW: 98898.4 Da    PI: 6.6289
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023543302.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3764.2e-24127228199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_023543302.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHENEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI--WNE 217
                     99*****************************8544444..48************************************************..889 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_023543302.1 218 KNQLLLGIRRA 228
                     9999****997 PP
2Auxin_resp118.26.5e-39253336183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+++YnPra++seF+++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdld++rWpnS+Wrs+k
  XP_023543302.1 253 AAHAAATNSRFTIFYNPRACPSEFIIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSTRWPNSHWRSVK 336
                     79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 891 aa     Download sequence    
MRLSSAGFSP QPPEGERRVL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAISTNRE  60
VDAHIPSYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSAQEQKEP YLPAELGAPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHENEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VIFIWNEKNQ LLLGIRRANR PQTVMPSSVL  240
SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ACPSEFIIPL AKYVKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDSTRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPLYPSPFS LRLKRPWPTG FPSFHGLKED ELGLNSQLMW LRGDGLDRGI QAMNFPGIGV  420
APWMQPRLDA SMVGMQPEIY QAMAAAALQE MRTVDPAKVQ AASLLQFQQT QTLPNRPATF  480
MSPQILQQPQ PTFIQGDDNQ RLSRSQAQTL PTVLQQEIKH QTFNNQQQQQ QQVFDHQQIP  540
STITTMSQFS SASQSQAQSL QTTPPLCRQQ SFSDSNPNHV TSPIISPLHS LLGSFPQDES  600
SQLLNLPRTN PMVHSSTWPS KRAAVDPLLS SVNSQFVLPQ GENMGTTQTN ISQNAISLPP  660
FPGRECSLDQ GNADPQSNLL FGVNIEPSSL LMQSGMPNLR GICSDSDSTA IPFSSNYVNT  720
AASNFSANPT GTPSNCIEDS GFLQSPENTG QVNPSTRTFV KVYKSGSLGR SLDISKFSSY  780
HQLRSELAHM FGLEGELEDP VRSGWQLVFV DRENDVLLLG DDPWPEFVNS VWCIKILSPQ  840
EVQEMGKQGL ELLKSVPIQR LSNGSCDNYA NRQESSRNLS TGITSVGSLE Y
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein