PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023543370.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 255aa MW: 28688.8 Da PI: 5.6791

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023543370.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40	7.1e-13	105	151	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++ErrRR+++ ++f+ L l+P + K +Ka++L A++Y+k+Lq XP_023543370.1 105 QHVIAERRRREKLSQSFAALSALIPGL-----NKTDKASVLGGAIKYVKDLQ 151 699*********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence
MEISSPKWLS ELEMMESAYQ HEITNYPHDY TLDELNFPTN FPATEKLITS VQLDSISSSQ 60 FISFGDSPEI ENLDVNQNRY VIGYEEGHEI KKRATIGRTS GNGQQHVIAE RRRREKLSQS 120 FAALSALIPG LNKTDKASVL GGAIKYVKDL QERVKWAEEE AGDEEGRVIK SVPNIETRVL 180 ESDVLVRIHC KKQKGCFSNI ITQIQMLKLT IVNSCVLPFG HSRLDITIIA QMEVGFCMTA 240 TDLGKKLTQT LVDLI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	110	115	ERRRRE
2	111	116	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	2e-42	bHLH family protein