PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023543641.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

AP2

Protein Properties

Length: 520aa MW: 57837.4 Da PI: 5.7003

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023543641.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.3	6.7e-17	151	200	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_023543641.1 151 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 200 78*****************......55**********************997 PP
2	AP2	43.7	6.6e-14	243	293	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ k +g XP_023543641.1 243 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 293 89******.7**5553..2.26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence
MWDLNDCPDV REGDESEACS SAKTSIEGDG DDDKRKRVGS ASNSSCSAAE EEEEELEEEE 60 EEEEGSDEVL GSMVMQIDTQ TPSPVTRQFF PLEDTEIPPP LPLPTTDSAF PRAHWVGVKF 120 GHPDPNNNSI NPNDLSHPIK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW DCGKQVYLGG 180 FDTAHAAARA YDRAAIKFRG VEADINFSIE DYEDDLKQMG NLTKEEFVHV LRRQSTGFPR 240 GSSKYRGVTL HKCGRWEARM GQFLGKKYVY LGLFDTEIEA ARAYDKAAIK CNGKEAVTNF 300 DPSIYESELN PTTDSTSNLA DHSLDLSLGN SSSKQNDSPN GSLDPHHSSS APLPMEADWQ 360 RSQGFRPPQL NLLQESSGGG GSGNKNYNNA QRGNTNRYLE RETMQLLSQT HIQSPISFEM 420 QRHGQFRRQA SGVDQPHSQI LLHNQNHPTF NYQFPGSSNG GRIIGSDLSL SLSDHQNQVV 480 ESGPSQVLAT AAASSGFSPQ IRPSKNWLHK NGFHCLIRPS

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence

MWDLNDCPDV REGDESEACS SAKTSIEGDG DDDKRKRVGS ASNSSCSAAE EEEEELEEEE  60
EEEEGSDEVL GSMVMQIDTQ TPSPVTRQFF PLEDTEIPPP LPLPTTDSAF PRAHWVGVKF  120
GHPDPNNNSI NPNDLSHPIK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW DCGKQVYLGG  180
FDTAHAAARA YDRAAIKFRG VEADINFSIE DYEDDLKQMG NLTKEEFVHV LRRQSTGFPR  240
GSSKYRGVTL HKCGRWEARM GQFLGKKYVY LGLFDTEIEA ARAYDKAAIK CNGKEAVTNF  300
DPSIYESELN PTTDSTSNLA DHSLDLSLGN SSSKQNDSPN GSLDPHHSSS APLPMEADWQ  360
RSQGFRPPQL NLLQESSGGG GSGNKNYNNA QRGNTNRYLE RETMQLLSQT HIQSPISFEM  420
QRHGQFRRQA SGVDQPHSQI LLHNQNHPTF NYQFPGSSNG GRIIGSDLSL SLSDHQNQVV  480
ESGPSQVLAT AAASSGFSPQ IRPSKNWLHK NGFHCLIRPS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	1e-112	AP2 family protein