PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023543864.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB
Protein Properties Length: 297aa    MW: 34196.9 Da    PI: 6.3555
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023543864.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.22.1e-092469346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      WT+eE +++ +a +++  +   +W ++a++++ g+t  +++  +q 
   XP_023543864.1 24 QWTPEENKRFENALALYDEDtsdRWFKVAAMIP-GKTIGDVIKQYQE 69
                     6********************************.*********9996 PP
2Myb_DNA-binding46.67.9e-15133177347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
   XP_023543864.1 133 PWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 177
                      7*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    
MEFLSPASYL RNSNWLFQET KGTQWTPEEN KRFENALALY DEDTSDRWFK VAAMIPGKTI  60
GDVIKQYQEL EEDVSDIEAG LIPIRDYDSS NSFTLERVDS SHGFDGLSHF FGSGFKRGTS  120
TRPSDHERKK GIPWTEEEHR QFLMGLKKYG KGDWRNISRN FVTTRTPTQV ASHAQKYFIR  180
QLSGGKDKRR SSIHDITTVN LPDTKSPLGD NNRHPSPDPA AMATQLHQLS EMVGSTEQQF  240
NWKSSNQVLD SSNDNMFMVM PSNEPQQQEE NLLKETIHRS AIASYYNIFQ MQPMNYH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-112MYB family protein