PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023544085.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 259aa MW: 28587.8 Da PI: 9.1792

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023544085.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00034	193	215	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp C+ Fs s+L+ H ++ H XP_023544085.1 193 QCPQCSAKFSLVSSLVEHVKKvH 215 7*******************999 PP
2	zf-C2H2	15	7.3e-05	232	253	3	23
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 Cp+C++ F ++ L+ Hi + H XP_023544085.1 232 CPKCSRGFIDPVALVEHIEKdH 253 ******************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence
MLTVRIFSPW LSFQAKIWVS VFCLEHRSYN RHSCPKADRR DVTVVICPLC AKGVRLVPDQ 60 DPNITWEIHV NTECDPSNYE KVTKKKKCPV PGCRESLTFS NTIKCRDCSV DHCLKHRFGL 120 DHKCPGPKKP EPAGFPFVGV LSRSKQEENG PKKALPNTAS SNWTTALLNV ASSFKASWKA 180 TGNNSNGNGH VEQCPQCSAK FSLVSSLVEH VKKVHESGVN RPGAKKVVID ACPKCSRGFI 240 DPVALVEHIE KDHGGTSKA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41835.1	1e-101	C2H2 family protein