PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023544090.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

ARF

Protein Properties

Length: 731aa MW: 80288.3 Da PI: 7.121

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023544090.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	75.5	6.2e-24	150	251	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d+ g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + ++ XP_023544090.1 150 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyN-QQRPSQELVAKDLLGLKWKFRHIYRGQPRRHLLTTGWSAFVNKKRLVSGDAVLFL--RGND 241 99**************************963.3445679********************************************..4489 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+++++r+ XP_023544090.1 242 GELRLGIRRA 251 999**996 PP
2	Auxin_resp	105.9	4.6e-35	276	357	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++a+s+ks F+v+YnPra++s+Fv +++k++k++++++svGmRf+++feted++ r +G ++g+ d+dp+ Wp+S+WrsL XP_023544090.1 276 VVNAISSKSSFSVCYNPRATSSQFVLPFHKFLKSMNRSFSVGMRFRLSFETEDAADLRHTGHITGIGDVDPIGWPGSRWRSL 357 689******************************************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 731 aa Download sequence
MGALIDLNTT EEDESPSSAA SSVSSSSASA LTSSPSPSLT SSICLELWHA CAGPLTSLPK 60 KGNLVVYLPQ GHLEQMQEFP ATPSDLPPHI LCRVIDVQLH AEAGSDEVYA QVSLLPENEQ 120 MEHKMQEEMS NDIEEEDVEE GEKTTTPHMF CKTLTASDTS THGGFSVPRR AAEDCFPPLD 180 YNQQRPSQEL VAKDLLGLKW KFRHIYRGQP RRHLLTTGWS AFVNKKRLVS GDAVLFLRGN 240 DGELRLGIRR AAQLKSGSTF SNICSQKLNS SSIMDVVNAI SSKSSFSVCY NPRATSSQFV 300 LPFHKFLKSM NRSFSVGMRF RLSFETEDAA DLRHTGHITG IGDVDPIGWP GSRWRSLMVR 360 WDDGEINRHG RVSPWEIEPS GSVSMSSNLV PPGLKRSRIG LSSTKLEFPV PHGIGATDFG 420 ESLRFHKVLQ GQEILGYNTP TDCDDNTRYH PPEKRRLLPD LHGSGIALMR NGPRNRLINS 480 ETSSRGFVFD ESFQFQKVLQ GQEIFPGPFY GRAMATNEVK ESGGCGPVDG FRLSTTRDGW 540 PTTMQCENFH TRSSIPSAQV SSPSSVFMFQ QSMVPVLSFD SHNRGIMNKS TSHNSGTAFM 600 TDNSMCPTSL GELNLLGLSH PSTTTASAFS GSKDLSSTTK AGCRLFGFSL TEEKNVGNTD 660 KGSPATTPIH AGTTIGAQCP LKSPLMSKVV GSNCTKQERW DKKECHGLIN LICIVMQGAL 720 QYHYANYSTY Y

Sequence ? help Back to Top

Protein Sequence Length: 731 aa Download sequence

MGALIDLNTT EEDESPSSAA SSVSSSSASA LTSSPSPSLT SSICLELWHA CAGPLTSLPK  60
KGNLVVYLPQ GHLEQMQEFP ATPSDLPPHI LCRVIDVQLH AEAGSDEVYA QVSLLPENEQ  120
MEHKMQEEMS NDIEEEDVEE GEKTTTPHMF CKTLTASDTS THGGFSVPRR AAEDCFPPLD  180
YNQQRPSQEL VAKDLLGLKW KFRHIYRGQP RRHLLTTGWS AFVNKKRLVS GDAVLFLRGN  240
DGELRLGIRR AAQLKSGSTF SNICSQKLNS SSIMDVVNAI SSKSSFSVCY NPRATSSQFV  300
LPFHKFLKSM NRSFSVGMRF RLSFETEDAA DLRHTGHITG IGDVDPIGWP GSRWRSLMVR  360
WDDGEINRHG RVSPWEIEPS GSVSMSSNLV PPGLKRSRIG LSSTKLEFPV PHGIGATDFG  420
ESLRFHKVLQ GQEILGYNTP TDCDDNTRYH PPEKRRLLPD LHGSGIALMR NGPRNRLINS  480
ETSSRGFVFD ESFQFQKVLQ GQEIFPGPFY GRAMATNEVK ESGGCGPVDG FRLSTTRDGW  540
PTTMQCENFH TRSSIPSAQV SSPSSVFMFQ QSMVPVLSFD SHNRGIMNKS TSHNSGTAFM  600
TDNSMCPTSL GELNLLGLSH PSTTTASAFS GSKDLSSTTK AGCRLFGFSL TEEKNVGNTD  660
KGSPATTPIH AGTTIGAQCP LKSPLMSKVV GSNCTKQERW DKKECHGLIN LICIVMQGAL  720
QYHYANYSTY Y

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	0.0	ARF family protein