PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023544398.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

LSD

Protein Properties

Length: 171aa MW: 17793.6 Da PI: 8.4422

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023544398.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	36.3	9.1e-12	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L YP GA++V+CalC tV XP_023544398.1 7 CSGCRSILLYPGGATNVCCALCSTV 31 ***********************99 PP
2	zf-LSD1	47.1	3.9e-15	46	70	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y rGA+sVRC++C+tV XP_023544398.1 46 CGGCRTLLMYARGATSVRCSCCHTV 70 ************************9 PP
3	zf-LSD1	41.7	1.9e-13	84	108	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L +P+GApsV+Ca+C+ V XP_023544398.1 84 CGNCRTTLVFPYGAPSVKCAICHYV 108 **********************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence
MQSQLVCSGC RSILLYPGGA TNVCCALCST VTSVPPPGTD MAQLICGGCR TLLMYARGAT 60 SVRCSCCHTV NLAPATNQVA HVNCGNCRTT LVFPYGAPSV KCAICHYVTN VGMSNVRVPI 120 PVHRRNGTLG SGMPPSSSSQ SQTVVVENPM SVDESGKLVS NVVVGVTTDK R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	7e-72	LSD family protein