PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023544429.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 402aa MW: 43938.8 Da PI: 6.4293

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023544429.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.1	8.4e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++++G g+W++ +++ g+ R++k+c++rw +yl XP_023544429.1 14 KGPWTPEEDQKLLAYIEEHGHGSWRALPSKAGLQRCGKSCRLRWINYL 61 79********************************************97 PP
2	Myb_DNA-binding	52.8	9.1e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l XP_023544429.1 67 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence
MGRSPCCDKV GLKKGPWTPE EDQKLLAYIE EHGHGSWRAL PSKAGLQRCG KSCRLRWINY 60 LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLAKMG 120 IDPVTHKPKN DALLTGDGQP KSVANLSHIA QWESARLEAE ARLVRESRLR NNNSHSSLQQ 180 LPNPPCFPPS SSSTSTSAQL LPNSDSPAAM ASRSLEALKA WNNGWSKSAE GASGILTRGI 240 GGDLESPTST LTFSENVLPV MATGCGEGEN SAAMIEFVGS SSSCEREWKE EGFGNSSQLP 300 EYKEGFENSM SFTSHDMTLS IEATWTAESL RTKEAIAEEG FTNLLLNNKV ERSQSEGGGG 360 GGGEDSENGS GSAASDYYED NKNYWNSILN LVNSSPSNSS IF

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence

MGRSPCCDKV GLKKGPWTPE EDQKLLAYIE EHGHGSWRAL PSKAGLQRCG KSCRLRWINY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLAKMG  120
IDPVTHKPKN DALLTGDGQP KSVANLSHIA QWESARLEAE ARLVRESRLR NNNSHSSLQQ  180
LPNPPCFPPS SSSTSTSAQL LPNSDSPAAM ASRSLEALKA WNNGWSKSAE GASGILTRGI  240
GGDLESPTST LTFSENVLPV MATGCGEGEN SAAMIEFVGS SSSCEREWKE EGFGNSSQLP  300
EYKEGFENSM SFTSHDMTLS IEATWTAESL RTKEAIAEEG FTNLLLNNKV ERSQSEGGGG  360
GGGEDSENGS GSAASDYYED NKNYWNSILN LVNSSPSNSS IF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	1e-106	MYB family protein