PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023544601.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family B3
Protein Properties Length: 458aa    MW: 51053.7 Da    PI: 6.3796
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023544601.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.46.3e-19195292398
                     EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     k l++sdv+++gr+vlpk+ aee+        +e+++++++   s+++W +k++y  +++s++yvl+ ++ +Fv++ngLk gD ++++  +++++
  XP_023544601.1 195 KDLKNSDVGSLGRIVLPKREAEENlpllT--DKEGIQIVMREvHSNKKWAMKYKYwaNNRSRMYVLE-NTGDFVRQNGLKMGDLMTLY--EDECK 284
                     7899**********************653..447789999995666********9877888889999.********************..66999 PP

                     ..EEEEE- CS
              B3  91 elvvkvfr 98 
                     +++v v++
  XP_023544601.1 285 NMYVAVVK 292
                     99998875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    
MDDDNHHYDL PPLSSATLSA ATILLSHPPP PPPPQDSHLP PILSQHCLGF SSPAPKSYFF  60
TNPPPPPPPP PPPHDQLPSH FPPSSAFLSY SFNDLTTSLF QKDEGRRVLD AWSTKVARSK  120
RRLARQRTLT LSRTSSSSSS TSAASSSGFG YNNDEYSKGL MATHFLNTDT HNNANPNNFT  180
LCTPDNKILR MLLKKDLKNS DVGSLGRIVL PKREAEENLP LLTDKEGIQI VMREVHSNKK  240
WAMKYKYWAN NRSRMYVLEN TGDFVRQNGL KMGDLMTLYE DECKNMYVAV VKGENDSREE  300
NEEMARNHNN KNNNNDNQPC SFTNMCIKDE EEDASLAMLI EELKHKPEDE DRPLSCSTST  360
SSSNSSSNNN NNNNALMASD SYLSTTQQQP SSSNMMGAAA KGIYNSNNNK KKKNGSKEGG  420
EDLQAVNGLE DCFRGLDTLP EVSGFKFPLF DYLSNDRT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28300.14e-49B3 family protein