PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023544742.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

HD-ZIP

Protein Properties

Length: 226aa MW: 26360.8 Da PI: 9.3654

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023544742.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66	5.1e-21	62	117	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++t+++++qle Le+ F+++ +++ +++ +L+k+lgL+ rq+ +WFqNrRa++k XP_023544742.1 62 KKTKTKLSPDQLESLERRFQEEVKLDPDRKMKLSKELGLQPRQIAIWFQNRRARWK 117 799****************************************************9 PP
2	HD-ZIP_I/II	108.7	4.3e-35	64	152	2	90
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 k +ls +q+++LE+ F+ee kL+p+rK++l++eLglqprq+a+WFqnrRAR+ktkql + y++Lk+++d++++++++L+++v +L++ XP_023544742.1 64 TKTKLSPDQLESLERRFQEEVKLDPDRKMKLSKELGLQPRQIAIWFQNRRARWKTKQLQHLYDTLKQEFDTISNQKHTLQQQVMKLKTM 152 5889**********************************************************************************965 PP

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence
MEWNNGSLTP KLLSPPLLHH RSSYTPCYNY NYIYNLDHFP VLERKNPAEE SVVGGVDQKK 60 KKKTKTKLSP DQLESLERRF QEEVKLDPDR KMKLSKELGL QPRQIAIWFQ NRRARWKTKQ 120 LQHLYDTLKQ EFDTISNQKH TLQQQVMKLK TMLLLREEAT RNPQGSMAYT DEETAESTSV 180 GVRSSTNNYT YNNKVEDLVE ISGSGPPPPP PFWWGAEEDA HRPSYP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	120	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	6e-38	HD-ZIP family protein