PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023544743.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

HD-ZIP

Protein Properties

Length: 204aa MW: 24034.9 Da PI: 5.2004

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023544743.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63	4.4e-20	52	107	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k+ +++++qle+Le++F+++ ++ +++ +L+k+lgL+ rq+ vWFqNrRa+++ XP_023544743.1 52 RKKKNRLSEDQLERLERCFQEEGKLEPDTKMQLSKELGLQPRQIAVWFQNRRARWR 107 79999**************************************************9 PP
2	HD-ZIP_I/II	115.7	2.8e-37	53	145	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kk rls++q++ LE++F+ee kLep+ K++l++eLglqprq+avWFqnrRAR++tkqlE y++Lk+++d++++e+++L++ev +Lr+ l+e XP_023544743.1 53 KKKNRLSEDQLERLERCFQEEGKLEPDTKMQLSKELGLQPRQIAVWFQNRRARWRTKQLEYLYDTLKQEFDTISKEKHTLQQEVLKLRSMLRE 145 59**************************************************************************************98875 PP

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence
MEWNSGSLIP TFVSPPSPYN YYYNYNLDQF PVLETKKQAV ECVVGGVDEE KRKKKNRLSE 60 DQLERLERCF QEEGKLEPDT KMQLSKELGL QPRQIAVWFQ NRRARWRTKQ LEYLYDTLKQ 120 EFDTISKEKH TLQQEVLKLR SMLREQTMRN QEPMAYEDVS GEATVESTSV GNYMYNNVED 180 FNQISGSGPP FWWGAEAAHR PSYP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	4e-41	HD-ZIP family protein