PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023544792.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family HSF
Protein Properties Length: 241aa    MW: 27750.3 Da    PI: 9.5889
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023544792.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.33.4e-35381292102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+y+++ed++++++isw+ +g++fvv+++ efak+vLpk Fkh nf+SFvRQLn+YgF+kv++++         weF +++F+kg+ke+l++
  XP_023544792.1  38 FLVKTYTVVEDPATDKVISWNGEGTAFVVWQTAEFAKDVLPKLFKHCNFSSFVRQLNTYGFRKVTTTR---------WEFCNDKFRKGEKEKLCE 123
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  XP_023544792.1 124 IRRRKA 129
                     ***985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    
MEAGVSDNNG DQKGLRLPLP SPPRTVESMM KKSTPPPFLV KTYTVVEDPA TDKVISWNGE  60
GTAFVVWQTA EFAKDVLPKL FKHCNFSSFV RQLNTYGFRK VTTTRWEFCN DKFRKGEKEK  120
LCEIRRRKAW TNKQQHEVQH EVDEDQRSSS SNSSSSQYNT LMDENKRLKK ENGDLSSELA  180
SMKGKCRELL DLVAKYGNGS RKEDEDERPK LFGVRLEVEG ERRRKTKRAE ETAFLPSQSC  240
K
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222227RRRKTK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.13e-65HSF family protein