PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023544855.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

HD-ZIP

Protein Properties

Length: 218aa MW: 25692 Da PI: 8.3836

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023544855.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.6	1e-18	62	115	4	57
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++++eq++ Le F +++++ +e++ +LA++lgL+ +qV +WFqNrRa++k+ XP_023544855.1 62 KRKLSSEQVKLLEINFGNEHKLETERKNRLASELGLDPSQVAIWFQNRRARWKN 115 56899***********************************************95 PP
2	HD-ZIP_I/II	113.2	1.6e-36	61	152	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkr+ls+eqvklLE +F +e+kLe+erK++la+eLgl+p qva+WFqnrRAR+k+++lE++y+ Lk+a+d+ + ++++L++e e+L+e+l+e XP_023544855.1 61 KKRKLSSEQVKLLEINFGNEHKLETERKNRLASELGLDPSQVAIWFQNRRARWKNQKLEHQYSILKTAHDSAVLQKTHLQSEIEKLKEQLAE 152 9****************************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence
MAAVNLRPDD DNSTLISHIY NPEIYTQMLP QQGMAEGNKP TKRRRRRSRA KEVAEAAAGL 60 KKRKLSSEQV KLLEINFGNE HKLETERKNR LASELGLDPS QVAIWFQNRR ARWKNQKLEH 120 QYSILKTAHD SAVLQKTHLQ SEIEKLKEQL AEAKNEIQKL VEVSERNRRW SVTMDDVQAA 180 ACWGEILMEE YEDVFYSMQE NNYNQPVEWY LNYMYTNY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	42	47	KRRRRR
2	42	63	KRRRRRSRAKEVAEAAAGLKKR
3	42	64	KRRRRRSRAKEVAEAAAGLKKRK
4	43	64	KRRRRRSRAKEVAEAAAGLKKR
5	43	65	KRRRRRSRAKEVAEAAAGLKKRK
6	44	65	KRRRRRSRAKEVAEAAAGLKKR
7	44	66	KRRRRRSRAKEVAEAAAGLKKRK
8	45	66	KRRRRRSRAKEVAEAAAGLKKR
9	45	67	KRRRRRSRAKEVAEAAAGLKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	3e-51	HD-ZIP family protein