PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023544890.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MIKC_MADS

Protein Properties

Length: 248aa MW: 28221.4 Da PI: 5.0205

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023544890.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	91	5.9e-29	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien rqvtfskRrng++KKA+ELSvLCdaeva+++fsstg+lye+ss XP_023544890.1 9 KKIENINSRQVTFSKRRNGLMKKAKELSVLCDAEVAIVVFSSTGRLYEFSS 59 68***********************************************96 PP
2	K-box	52.5	2.2e-18	101	175	26	100
K-box 26 keienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +e +L+ + ++ G++L+sLs++eLq+Le+qL +++ +i++kK+ llleq+++ + + + + +en++Lrk+lee XP_023544890.1 101 DEFVKLKLTYMQMRGQELDSLSFRELQNLENQLREGIVSIKDKKESLLLEQLQRCRSQGEVVISENETLRKQLEE 175 5667788888999***********************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence
MGRGRVEIKK IENINSRQVT FSKRRNGLMK KAKELSVLCD AEVAIVVFSS TGRLYEFSST 60 SMEHTLSRYR GQGMELDFPR ETLDHPTQLP PSDSDAKSSE DEFVKLKLTY MQMRGQELDS 120 LSFRELQNLE NQLREGIVSI KDKKESLLLE QLQRCRSQGE VVISENETLR KQLEEFQQRN 180 NTPLLESSPL QRSYFSDSKT ASTNETEAET EAEENDCSEI SLHLGLSLDG RQNRKRSVEG 240 TSNDTAGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57390.1	2e-55	MIKC_MADS family protein