PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023544953.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Trihelix

Protein Properties

Length: 249aa MW: 30338.8 Da PI: 10.3764

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023544953.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	72.6	6.7e-23	33	114	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W+ e+++L+++r +++r+++ k++ lW +v+ km+++gf+r+ +qCk+kw+nl +ryk +++++ k + +++p++d+l+ XP_023544953.1 33 WSVPETKELLAIRAALDRRFSEMKQNRMLWISVAGKMKAKGFNRNDEQCKCKWKNLVTRYKGCETMDPKA--LK-QQFPFYDDLH 114 ******************************************************************95..44.479**997 PP

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence
MEDCDRRAFL HRRTNRIGVN AEAAAAADRF PAWSVPETKE LLAIRAALDR RFSEMKQNRM 60 LWISVAGKMK AKGFNRNDEQ CKCKWKNLVT RYKGCETMDP KALKQQFPFY DDLHTIFTAR 120 MQKNWWIEPE NRAKDSKRKA MTERLSSEDP KRGKRRREED ERSNLKEIMK GFVEREKEME 180 RQWREAFRVR EEERRLKEKE WRMKMEGLER EKMMTWIMWR EKDDERRERE EARALNTHAF 240 IYALLSSFT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	157	KRKAMTERLSSEDPKRGKRRR
2	150	156	PKRGKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01380.1	5e-42	Trihelix family protein