PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023545035.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 299aa MW: 31705.7 Da PI: 9.9344

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023545035.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59	1e-18	5	50	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd+ l +v+++G+++W++I++ ++ gR++k+c++rw + XP_023545035.1 5 KGPWSPEEDDALRGLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 50 79****************************.*********985 PP
2	Myb_DNA-binding	54.3	3.2e-17	59	101	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++eEde +++a++ +G++ W+tIar + gRt++ +k++w++ XP_023545035.1 59 PFSPEEDETIIRAHANFGNR-WATIARLLS-GRTDNAVKNHWNST 101 89****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence
MDRIKGPWSP EEDDALRGLV QKHGPRNWSL ISKSIPGRSG KSCRLRWCNQ LSPQVEHRPF 60 SPEEDETIIR AHANFGNRWA TIARLLSGRT DNAVKNHWNS TLKRKCSSMM NEGFEADPNS 120 QPMKKSVSAG AAVNGLYMNP GSPSGSDISD SSVPVMSPTV YRPVARTGSV VPPGESAPSP 180 TTDPATSLSL SLPGASGAGD GLNRSGSGST GQAPLMAAFA QIQSMAASEL TKAAQLDTRG 240 GGGAHEKKNG LGVFSADLMA VMQEMIKSEV KSYMEGMSEK RGRGCFQQAK AGGIRNVGF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67300.1	8e-83	MYB family protein