PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023545051.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Protein Properties

Length: 882aa MW: 97503.3 Da PI: 6.5114

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023545051.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	60.1	3.8e-19	338	437	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k l+ sd+++ grlvlpkk+ae++ +++++e+ l+++d +g++W +++++ +++s++yvl+ G +a +L++gD+v+F++ + e++ XP_023545051.1 338 FEKMLSASDAGRIGRLVLPKKCAEAYfpSISQPEGLPLKVQDAKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQAMQLQAGDTVTFSRLE-PEGK 430 89************************666677788***********99899999999.*******************766.7777 PP .EEEEE- CS B3 92 lvvkvfr 98 lv+++++ XP_023545051.1 431 LVMGFRK 437 7777776 PP

Sequence ? help Back to Top
Protein Sequence Length: 882 aa Download sequence
MSSAVTTASS SSSPISSRPC HNSDCKELRP ERSRKGWRLR TGDFAELCDR CASAYEEGRF 60 CETFHLNASG WRCCESCGKR VHCGCIVSAH AFTLLDPGGI ECMTCARKNV ILTLLFHSAF 120 SDRLKDLSVK NWSQLAGSGP VPWRQAPSMF NSSLPSGERP PYEVDISAAL NKLNTSERLP 180 VSIEKRKNDD FSERFLNGSL MQCGQDICEN GTAGGIKCED KPSSCSNIPQ QSSFVKEDSS 240 TTQYGLNVPY APPNEPSARS RISGTHLRST SLSPLPKQIH TNLQNGADSS NEPQSRNGRP 300 RGDSRGKNYL LPRYWPRFTD QELQQISVDS NSVITPLFEK MLSASDAGRI GRLVLPKKCA 360 EAYFPSISQP EGLPLKVQDA KGKEWIFQFR FWPNNNSRMY VLEGVTPCIQ AMQLQAGDTV 420 TFSRLEPEGK LVMGFRKASA AADQENEAKK TKNGALVHGD AELADPNSWT KVDKSGYIAK 480 EVLGAKPSIS RKRKSSTLGS KSKRLRIENE DMIELKITWE EAQGLLRAPP NQVPNVLVIE 540 GFEFEEYEEA PVLGKPTIIP PDNTGERIQW NQCEDCLKWR KLPASAVLPS KWTCSDNSWD 600 PERSFCSAAQ ELSTEKLEEL LSPGDSAAPV KKATKLEPDN VEALEGLDTL ANLAILGEGE 660 VSQATTKHPR HRPGCSCIVC IQPPSGKGPK HKQTCTCNVC LTVKRRFQTL MQRREKKQSV 720 KEAETIRQRQ QFQDEMFLDR SMDDESLTCS NTSTSKLIEE GKMNDDSDED PNKNKPSTSP 780 FKGQIDLNMQ PEREDELSPG SDSGSMMKNL QDTGDRFFEQ QRLNSGGTGS SSSDPLEPGV 840 EREHRVENIS SVVDLRSSNV DADKDQPATL SFNASASMPS TG

Sequence ? help Back to Top

Protein Sequence Length: 882 aa Download sequence

MSSAVTTASS SSSPISSRPC HNSDCKELRP ERSRKGWRLR TGDFAELCDR CASAYEEGRF  60
CETFHLNASG WRCCESCGKR VHCGCIVSAH AFTLLDPGGI ECMTCARKNV ILTLLFHSAF  120
SDRLKDLSVK NWSQLAGSGP VPWRQAPSMF NSSLPSGERP PYEVDISAAL NKLNTSERLP  180
VSIEKRKNDD FSERFLNGSL MQCGQDICEN GTAGGIKCED KPSSCSNIPQ QSSFVKEDSS  240
TTQYGLNVPY APPNEPSARS RISGTHLRST SLSPLPKQIH TNLQNGADSS NEPQSRNGRP  300
RGDSRGKNYL LPRYWPRFTD QELQQISVDS NSVITPLFEK MLSASDAGRI GRLVLPKKCA  360
EAYFPSISQP EGLPLKVQDA KGKEWIFQFR FWPNNNSRMY VLEGVTPCIQ AMQLQAGDTV  420
TFSRLEPEGK LVMGFRKASA AADQENEAKK TKNGALVHGD AELADPNSWT KVDKSGYIAK  480
EVLGAKPSIS RKRKSSTLGS KSKRLRIENE DMIELKITWE EAQGLLRAPP NQVPNVLVIE  540
GFEFEEYEEA PVLGKPTIIP PDNTGERIQW NQCEDCLKWR KLPASAVLPS KWTCSDNSWD  600
PERSFCSAAQ ELSTEKLEEL LSPGDSAAPV KKATKLEPDN VEALEGLDTL ANLAILGEGE  660
VSQATTKHPR HRPGCSCIVC IQPPSGKGPK HKQTCTCNVC LTVKRRFQTL MQRREKKQSV  720
KEAETIRQRQ QFQDEMFLDR SMDDESLTCS NTSTSKLIEE GKMNDDSDED PNKNKPSTSP  780
FKGQIDLNMQ PEREDELSPG SDSGSMMKNL QDTGDRFFEQ QRLNSGGTGS SSSDPLEPGV  840
EREHRVENIS SVVDLRSSNV DADKDQPATL SFNASASMPS TG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	490	495	SRKRKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	1e-142	B3 family protein