PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023545250.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 679aa MW: 72977.8 Da PI: 6.5061

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023545250.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.8	3e-16	449	495	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K++Ka++L +A+eY+k Lq XP_023545250.1 449 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 495 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 679 aa Download sequence
MPLSELCRVA REKLDSAQDR NNMVASDLSL SPENDVFELV WENGQILQQG QSSRTRKNSN 60 MNTSQPLCLP GHLNNAKMGK FGAIDSVVRD VIATGSSPEV ELARDDDDDD NDIVPWLSYP 120 LDGHLQHDYS SDFLPELSGV TINDHPARHS VASSIGKANG VHQVNRDTRL NSLHGTNLED 180 GNISKLSTLD VSTTGPRSST NELRSLAPQQ SQTLFPHLRV RCTGSTENAS GKILRDSLMG 240 QTLQVPLIAS SSSSTARQKL DPTPSSNSPN VINFSHFLRP AALLKSNPQN HGVVGTVGSA 300 ATSQRDQSSC IRNESKTCCK NAIVPSIDDN KPSDAKAPEQ LRAVKHPKLA CLGDSANNED 360 RPDRCLQVGA PKVLPDSEKA VESAFAASVC SRNSVEGASD DPTLNRKRKC HETEDSEWHS 420 DDVEEECNDV KRVTPTRGTG SKRSRAAEVH NLSERRRRDR INEKMRALQE LIPNCNKVDK 480 ASMLDEAIEY LKTLQLQVQI MSMGAGLFMP PMMSPGGMPF MNAPHMYSPM GVGMGMGFGI 540 GMPDVNVGSP GYPMVQVPHV QGTHFPGPSI PAQTVMHGMP GSNFQVLGLP GQGLPIPMPR 600 GPIAPFTGGP FMTNPGVAVA PVENFGSAAA CSSKDASPKS DSPMVPNGGT DPLTTPTPRQ 660 ANEQASCANG QPCEPHHQK

Sequence ? help Back to Top

Protein Sequence Length: 679 aa Download sequence

MPLSELCRVA REKLDSAQDR NNMVASDLSL SPENDVFELV WENGQILQQG QSSRTRKNSN  60
MNTSQPLCLP GHLNNAKMGK FGAIDSVVRD VIATGSSPEV ELARDDDDDD NDIVPWLSYP  120
LDGHLQHDYS SDFLPELSGV TINDHPARHS VASSIGKANG VHQVNRDTRL NSLHGTNLED  180
GNISKLSTLD VSTTGPRSST NELRSLAPQQ SQTLFPHLRV RCTGSTENAS GKILRDSLMG  240
QTLQVPLIAS SSSSTARQKL DPTPSSNSPN VINFSHFLRP AALLKSNPQN HGVVGTVGSA  300
ATSQRDQSSC IRNESKTCCK NAIVPSIDDN KPSDAKAPEQ LRAVKHPKLA CLGDSANNED  360
RPDRCLQVGA PKVLPDSEKA VESAFAASVC SRNSVEGASD DPTLNRKRKC HETEDSEWHS  420
DDVEEECNDV KRVTPTRGTG SKRSRAAEVH NLSERRRRDR INEKMRALQE LIPNCNKVDK  480
ASMLDEAIEY LKTLQLQVQI MSMGAGLFMP PMMSPGGMPF MNAPHMYSPM GVGMGMGFGI  540
GMPDVNVGSP GYPMVQVPHV QGTHFPGPSI PAQTVMHGMP GSNFQVLGLP GQGLPIPMPR  600
GPIAPFTGGP FMTNPGVAVA PVENFGSAAA CSSKDASPKS DSPMVPNGGT DPLTTPTPRQ  660
ANEQASCANG QPCEPHHQK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	454	459	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	6e-62	bHLH family protein