PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023545320.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 234aa MW: 26755.2 Da PI: 8.8912

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023545320.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.4	3.8e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l+++++++G g+W+t+++ g+ R++k+c++rw +yl XP_023545320.1 14 KGLWSPEEDEKLLNYITKHGHGCWSTVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	46.7	7.5e-15	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E++l+v+++ lG++ W+ Ia+ ++ gRt++++k+ w++ XP_023545320.1 67 RGPFSQQEEDLIVELHSVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110 89******************.*****.*******9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence
MGRHSCCFKQ KLRKGLWSPE EDEKLLNYIT KHGHGCWSTV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGPF SQQEEDLIVE LHSVLGNRWS QIAAQLPGRT DNEIKNLWNS CIKKKLKQKG 120 IDPNTHKPYL DQETNNNGKN NSLIITSNDQ KSHEKASPIQ SPDMSTTTFE AFSNLFSPSL 180 NSCAVAPSST SQVVHNTNNN GFLWQPDEFL SAPSDLMRSD WHRHPTLQPE LFWT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G57560.1	6e-88	MYB family protein