PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023545650.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family YABBY
Protein Properties Length: 196aa    MW: 21709.7 Da    PI: 6.8661
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023545650.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY184.84.6e-57111775166
           YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvek.eesast 94 
                     + seq+ yvqC+ C+til+v+vP++ l++vv vrCG Ct llsvn+ak s     ll++ sh   +l +e  ++l+v+++ +  n  + ++  ++
  XP_023545650.1  11 DPSEQIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCTGLLSVNMAKPSfipfDLLTSLSH---NLPKEPFQDLNVQKHLCLDNLNNtSDLLTS 102
                     679********************************************998655555555555...666665666666655444333330333333 PP

           YABBY  95 svssekl...senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPki 166
                     +++  +    ++++   +p +p v++PPek+qr+Psayn+fikeei+r+ka+nP ++h+eaf +aaknWah+P++
  XP_023545650.1 103 YHNIIQNhedDDDDAIIIPPTPVVNKPPEKKQRAPSAYNQFIKEEIRRLKAENPGMAHKEAFKTAAKNWAHLPPV 177
                     333333211133333334555669*************************************************87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    
MSSTLEQLLP DPSEQIRYVQ CGLCSTILLV NVPYSNLSMV VSVRCGNCTG LLSVNMAKPS  60
FIPFDLLTSL SHNLPKEPFQ DLNVQKHLCL DNLNNTSDLL TSYHNIIQNH EDDDDDAIII  120
PPTPVVNKPP EKKQRAPSAY NQFIKEEIRR LKAENPGMAH KEAFKTAAKN WAHLPPVNGE  180
GDHVGSGRKG KSLISN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.13e-37YABBY family protein