PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023545856.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family YABBY
Protein Properties Length: 193aa    MW: 21738.6 Da    PI: 8.7556
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023545856.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY203.39.6e-6361654170
           YABBY   4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeen..lksnvekeesastsv 96 
                     +s+ eq+Cy+ CnfCn +lavsvP + +f +vtvrCGhC++l svn+a a q l+ ++    +  ++    l  ++    l s  + + ++++ +
  XP_023545856.1   6 NSAQEQLCYIPCNFCNIVLAVSVPCSNIFDIVTVRCGHCSNLWSVNMAAAFQSLSWQNS---QASNHTYSGLAADHYRaeLGSSSKCN-NKMKMR 96 
                     6789**********************************************999998886...33333222222222220022222111.222222 PP

           YABBY  97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                     +  + ++n+d+ +     ++r Pek+qrvPsayn+fikeeiqrika+nPdi+hreafs+aaknWahfP+ihfgl
  XP_023545856.1  97 APIRNPTNDDQRI-----INRAPEKKQRVPSAYNQFIKEEIQRIKANNPDITHREAFSTAAKNWAHFPHIHFGL 165
                     2222255555555.....48****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    
MSSCINSAQE QLCYIPCNFC NIVLAVSVPC SNIFDIVTVR CGHCSNLWSV NMAAAFQSLS  60
WQNSQASNHT YSGLAADHYR AELGSSSKCN NKMKMRAPIR NPTNDDQRII NRAPEKKQRV  120
PSAYNQFIKE EIQRIKANNP DITHREAFST AAKNWAHFPH IHFGLMLETN NLQAKTKNDG  180
SEKHLMSVPG LHY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.16e-84YABBY family protein