PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023545927.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB_related

Protein Properties

Length: 627aa MW: 66894.9 Da PI: 7.5213

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023545927.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.2	3.3e-07	199	243	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH..HHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar..tmgkgRtlkqcksrw 44 r++W++ Ed+ l avk+ G g+W+ I r + Rt+ q+ rw XP_023545927.1 199 RKPWSEAEDLELMAAVKKCGEGNWANIIRgdFLS-DRTASQLSQRW 243 789**********************996521344.66666666666 PP

Sequence ? help Back to Top
Protein Sequence Length: 627 aa Download sequence
MKLQKRSLNE NDVSTILRRY SPTTVLALLQ EVAQVPEAKI EWKELVKNTS TGISNPREYQ 60 MLWRHLAYRH ALLDNLEDEK APLEDDSDLE CDLEPFPSVS CETLTEAAAC AKVFISSGSS 120 SDLNVPSSST IEAPLTISLP RSYRDGVQFE NVDPACSIKG ASITVPVSVQ RQPVLTPPSV 180 EGLNANGSTY GNNASRRKRK PWSEAEDLEL MAAVKKCGEG NWANIIRGDF LSDRTASQLS 240 QRWAIIKKKH GNLTVGANTA GTHLSEVQLA ARHAMSLALD RHVVGSLKAA RISGSASTNK 300 IGNGSSLAVS ATSEQVQDKL QQSPTHTKPS PIGSSSLTAK AQVTTSKKMI PKSSFDSDCI 360 VRAAAVAAGA RIASPADAAS LLKAAQSKNA IHITAKIPAS TKTPTPGRGS NHLEAHPSIK 420 TTTLSNTLAV MPSLSRGVPV KTTSLQTATL SSVPTDQNIA VASVTAATDP LSEKEIKTVE 480 DVRGRGLGGV QTTFQKNDHC LSRKSISERV LDEKPADLGP ALKRQTTETS NCSSSSQNTP 540 TADGYIKVET CNQVEERQNS NTSAVPVSSD QQEIMNQSQV ERSKPQDMDI DSDGKDTPIT 600 KADGCSENSG HKEAVNDILE GNTAVKS

Sequence ? help Back to Top

Protein Sequence Length: 627 aa Download sequence

MKLQKRSLNE NDVSTILRRY SPTTVLALLQ EVAQVPEAKI EWKELVKNTS TGISNPREYQ  60
MLWRHLAYRH ALLDNLEDEK APLEDDSDLE CDLEPFPSVS CETLTEAAAC AKVFISSGSS  120
SDLNVPSSST IEAPLTISLP RSYRDGVQFE NVDPACSIKG ASITVPVSVQ RQPVLTPPSV  180
EGLNANGSTY GNNASRRKRK PWSEAEDLEL MAAVKKCGEG NWANIIRGDF LSDRTASQLS  240
QRWAIIKKKH GNLTVGANTA GTHLSEVQLA ARHAMSLALD RHVVGSLKAA RISGSASTNK  300
IGNGSSLAVS ATSEQVQDKL QQSPTHTKPS PIGSSSLTAK AQVTTSKKMI PKSSFDSDCI  360
VRAAAVAAGA RIASPADAAS LLKAAQSKNA IHITAKIPAS TKTPTPGRGS NHLEAHPSIK  420
TTTLSNTLAV MPSLSRGVPV KTTSLQTATL SSVPTDQNIA VASVTAATDP LSEKEIKTVE  480
DVRGRGLGGV QTTFQKNDHC LSRKSISERV LDEKPADLGP ALKRQTTETS NCSSSSQNTP  540
TADGYIKVET CNQVEERQNS NTSAVPVSSD QQEIMNQSQV ERSKPQDMDI DSDGKDTPIT  600
KADGCSENSG HKEAVNDILE GNTAVKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	2e-71	MYB_related family protein