PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023545966.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Trihelix

Protein Properties

Length: 377aa MW: 43433.7 Da PI: 6.3341

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023545966.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	88	1.1e-27	69	150	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li++rrem+ ++++k++k+lWe++s+kmrergf rsp++C++kw+nl k++kk k+++++ s +++y++++e XP_023545966.1 69 WVQDETRSLIALRREMDGLFNTSKSNKHLWEQISAKMRERGFDRSPTMCTDKWRNLLKEFKKAKHQDRGS---GSAKMSYYKEIE 150 ******************************************************************84...556899*997 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MYLSDKPRPI DIYKEEASRD MMIEVASNAD HHIQPHQPQP THQQHQMMLG DSSGEDHEVK 60 APKKRAETWV QDETRSLIAL RREMDGLFNT SKSNKHLWEQ ISAKMRERGF DRSPTMCTDK 120 WRNLLKEFKK AKHQDRGSGS AKMSYYKEIE EILKERSKST QYKSPTPPKI DSYIQFSDKG 180 IEDNGLTFGP VEGGRPSLNL ERQLDHDGHP LAITAADAVA ATGIPPWNWR EAPGNDGESQ 240 AFGGRVISVK WGDYTRRIGI DGTSEAIKEA IKSAFRLRTK RAFWLEDEDQ VVRSLDRDMP 300 LGNYTLHLDE GLAVKICLYD ESDHLPVHTE EKIFYIEEDY RDFLTRRGWT CLREFDGYRN 360 IDTMDDLRPG AIYRGIS

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MYLSDKPRPI DIYKEEASRD MMIEVASNAD HHIQPHQPQP THQQHQMMLG DSSGEDHEVK  60
APKKRAETWV QDETRSLIAL RREMDGLFNT SKSNKHLWEQ ISAKMRERGF DRSPTMCTDK  120
WRNLLKEFKK AKHQDRGSGS AKMSYYKEIE EILKERSKST QYKSPTPPKI DSYIQFSDKG  180
IEDNGLTFGP VEGGRPSLNL ERQLDHDGHP LAITAADAVA ATGIPPWNWR EAPGNDGESQ  240
AFGGRVISVK WGDYTRRIGI DGTSEAIKEA IKSAFRLRTK RAFWLEDEDQ VVRSLDRDMP  300
LGNYTLHLDE GLAVKICLYD ESDHLPVHTE EKIFYIEEDY RDFLTRRGWT CLREFDGYRN  360
IDTMDDLRPG AIYRGIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	0.0	Trihelix family protein