PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023546047.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family HD-ZIP
Protein Properties Length: 225aa    MW: 26004.1 Da    PI: 4.2885
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023546047.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.5e-184596556
                    SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +++  +q++ Le+ Fe ++++  e++++LAk+lgL+ rqV +WFqNrRa+ k
  XP_023546047.1 45 RRLLVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQVAIWFQNRRARCK 96
                    466679********************************************99 PP
2HD-ZIP_I/II124.45.3e-4043134293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     kkrrl  +qv++LE+sFe e+kLeperK++la+eLglqprqva+WFqnrRAR ktkqlEkdy +Lk++yd+lk++ e L +e+eeL++e+++
  XP_023546047.1  43 KKRRLLVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQVAIWFQNRRARCKTKQLEKDYLSLKTSYDNLKSSYEDLVREKEELETEIRN 134
                     9**************************************************************************************99976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    
MADGAVYAPP SSDVLDSLII PGEFIGETNE DELLDGIWRQ ASKKRRLLVD QVQFLEKSFE  60
VENKLEPERK TQLAKELGLQ PRQVAIWFQN RRARCKTKQL EKDYLSLKTS YDNLKSSYED  120
LVREKEELET EIRNLEERLA IGEKGKRIDY CCWENQNSSM ADSSHGFETE LSDCFSQVEE  180
ENLSRDLLPI CFPKLESCSY DDDLTDGCNL IGFQIQDQPL GFWPC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19199RRARCKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-35HD-ZIP family protein