PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023546292.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family ARF
Protein Properties Length: 1034aa    MW: 115174 Da    PI: 7.244
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023546292.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.23.2e-23126227199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ +sW++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++
  XP_023546292.1 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldySMQPPA-QELVARDLHDNSWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI--RDEK 217
                     99*****************************9545444.38************************************************..4567 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l+++++r+
  XP_023546292.1 218 SQLLLGIRRA 227
                     7789999997 PP
2Auxin_resp124.19.8e-41252334183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+++YnPras+seFv++++k++ka++ +vs+GmRf+m+fete+s  rr++Gt++g+sd+d+vrW+nS+Wr+L+
  XP_023546292.1 252 AAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYAQVSLGMRFRMMFETEESGVRRYMGTITGISDMDSVRWKNSQWRNLQ 334
                     79*******************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 1034 aa     Download sequence    
MKAPPNGFLP NSGEGERKNI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMNKE  60
TDFIPSYPNL PSKLICMLHN VTLHADLETD EVYAQMTLQP VNKYEKEALL ASDIGLKQNR  120
QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDYSMQ PPAQELVARD LHDNSWTFRH  180
IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGIRRANRQ QPALSSSVIS  240
SDSMHIGILA SAAHAAANNS PFTIFYNPRA SPSEFVIPLA KYNKAMYAQV SLGMRFRMMF  300
ETEESGVRRY MGTITGISDM DSVRWKNSQW RNLQVGWDES AAGERPNRVS IWEVEPVVTP  360
FYICPPPFFR PKFPKQPGMP DDESEIENAF KRAMPWFGDE FGMKDASSSI FPGLSLVQWM  420
SMQHNNQFPA AQSGILPSMV APSALHGTLT NDESSKLLSF QAPLMSSPNL QFSKANQQNQ  480
VAQLPPTTWS QQQQVQQMLQ VPASQQLQQQ QQQQLPLQQE LQQQVPQQQQ LQMQQXLLQV  540
PASQQLQQQQ LPLQQELQQQ VPQQQQLQMQ QPQRQQQTSQ SALLNNSVTA PNHLPNQTLQ  600
QPLVYSQLQQ QQLLAGNIQS HQTSQPSNKN LFQTTSLSQE VQFQPQIEQQ PSLLPKHQQP  660
TQVQQAPLQL MQQSLSQRAQ QQPQVQQFSQ PVPTEQQLQL QLLQKLQPQQ QHPLLSPSSP  720
LLPPQLLQQQ NVHQQNQQLP PLPLSNQQQF NTSGGSLQTE KHNSNGFSSL GLMQSQQAPI  780
THSHNQFKPT MAIRAYSGLT DGDAPSCSTS PSTNNCQVSA SNMLNKNQQG AATLGGDPVA  840
EPATNLAQDL QRKPDLRIKH EFPSSKGLDQ LKYKGTVPDQ LEACSSGTSY CLDAGTIQQT  900
FPLPTCLDND VQSHPRNNIP FSNSMDGLAP DTLLSRGYDS QKDLQNLLSN YGGGVPRDIE  960
TELSTAAISS QSFGVPNLPF KSDCSNDVNV NEAGALSSGL WANHSQRMRT YTKVCHPTLC  1020
LLPLVSPVNS KRYQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0ARF family protein