PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023546414.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 508aa MW: 55539.8 Da PI: 7.2878

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023546414.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.1	3.5e-17	23	70	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +lv++v++ G g+W+++ r g++R++k+c++rw ++l XP_023546414.1 23 KGPWTASEDAILVEYVRKNGEGNWNAVQRNSGLNRCGKSCRLRWANHL 70 79******************************************9986 PP
2	Myb_DNA-binding	50.5	4.9e-16	76	119	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE+ l++++++++G++ W++ a+ ++ gRt++++k++w++ XP_023546414.1 76 KGAFSPEEERLILQLHAKYGNK-WARMASQLP-GRTDNEIKNYWNT 119 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence
MTPSTAVGTG NGGGAGAEGG LKKGPWTASE DAILVEYVRK NGEGNWNAVQ RNSGLNRCGK 60 SCRLRWANHL RPNLKKGAFS PEEERLILQL HAKYGNKWAR MASQLPGRTD NEIKNYWNTR 120 IKRRQRQGLP LYPHDIKPLS AQSQPTTPTS PLPSPTTSTS TPTTPTGIPT SMFQFHSLSP 180 NSMHSLSPTP PPHSPLSSPH QHEPHTFSSF PFTAPSSFTF HRPPPILAAP IRFKHFRANT 240 NTTPVFTHHP SLLTHSPTPP PPQQLSHVDS FQFPMTLATN SPSPSPTSHI LQTHSGMVMN 300 NCMSSLKQDL SPTQFHQINV PHTGLSFKDD KVGSAMSFSS GIGLLEDLLE EAQVLGCDVN 360 SNAKLSSSSS CLVSPGEQRL FDDFHKLAQD SNTCLFFSTK AKEDGGDGGS PAASEDWSKL 420 LNAAIPSNMQ LPQWYDTNKE DEQQISYGQT VSSALPNHHH HHQQNQDDNV GELDVQQLAA 480 FFPVATEQDQ PPVTNNSSCP WDNLPGIC

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence

MTPSTAVGTG NGGGAGAEGG LKKGPWTASE DAILVEYVRK NGEGNWNAVQ RNSGLNRCGK  60
SCRLRWANHL RPNLKKGAFS PEEERLILQL HAKYGNKWAR MASQLPGRTD NEIKNYWNTR  120
IKRRQRQGLP LYPHDIKPLS AQSQPTTPTS PLPSPTTSTS TPTTPTGIPT SMFQFHSLSP  180
NSMHSLSPTP PPHSPLSSPH QHEPHTFSSF PFTAPSSFTF HRPPPILAAP IRFKHFRANT  240
NTTPVFTHHP SLLTHSPTPP PPQQLSHVDS FQFPMTLATN SPSPSPTSHI LQTHSGMVMN  300
NCMSSLKQDL SPTQFHQINV PHTGLSFKDD KVGSAMSFSS GIGLLEDLLE EAQVLGCDVN  360
SNAKLSSSSS CLVSPGEQRL FDDFHKLAQD SNTCLFFSTK AKEDGGDGGS PAASEDWSKL  420
LNAAIPSNMQ LPQWYDTNKE DEQQISYGQT VSSALPNHHH HHQQNQDDNV GELDVQQLAA  480
FFPVATEQDQ PPVTNNSSCP WDNLPGIC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.1	1e-66	MYB family protein