PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023546496.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

ARR-B

Protein Properties

Length: 544aa MW: 61346.4 Da PI: 5.138

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023546496.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	75.5	6.9e-24	200	253	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++W+ +LH++Fv+av+++ G +k Pk+il+lm+v+ Lt+e+v+SHLQkYRl XP_023546496.1 200 KARVVWSVDLHQKFVKAVDHI-GFDKVGPKKILDLMNVPWLTRENVASHLQKYRL 253 68*****************.9*****************************8 PP
2	Myb_DNA-binding	34.5	4.9e-11	202	252	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r W+ ++++++v+av G + +k+I m+ +t++++ s++qky+ XP_023546496.1 202 RVVWSVDLHQKFVKAVDHIGFDkvGPKKILDLMNvPWLTRENVASHLQKYR 252 678***********************************************7 PP
3	Response_reg	82.6	1.3e-27	21	129	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+vdD+p+ +++l+++l+k y ev+++ ++eal ll+e++ +D+++ D++mp+mdG++ll++ e +lp+i+++ ge + + + ++ G XP_023546496.1 21 VLVVDDDPTWLRILEKMLKKCSY-EVTTCCLAREALSLLRERKdgYDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHG 113 89*******************.***********999999******************6644.8****************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a d+l Kp+ ++el++ XP_023546496.1 114 ACDYLLKPIRMKELRN 129 ***********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 544 aa Download sequence
MVMENGFSSP RSDAFPVGLR VLVVDDDPTW LRILEKMLKK CSYEVTTCCL AREALSLLRE 60 RKDGYDIVIS DVNMPDMDGF KLLEHVGLEM DLPVIMMSVD GETSRVMKGV QHGACDYLLK 120 PIRMKELRNI WQHVLRKKIQ EGRDIEGHDV LEGIQILRNG SDRYDDSQFL RGEELFSLRK 180 RKDIDKHEDR EFCDTSSTKK ARVVWSVDLH QKFVKAVDHI GFDKVGPKKI LDLMNVPWLT 240 RENVASHLQK YRLYLSRLQK ENDPKACFVV GMKHTDSCSK DRDGNFSLCS SLAGPQTDVT 300 NSSFSFSGDN FLLQNDSSEP KRAAAAARSV PEPIKLAAFD PSKRTCYPWV DAPETKFKQE 360 IKPVVHSEGD FSQFPATVPP HHVQIDQLQS ISSISSGRSA TEKDIASSIE SKPMYSEECS 420 QQMVHVNLPK VATDPSSTTT TPAAATTPLG KKNQSLNLSS ISTDIGSGLP FESFDEDLQG 480 YLLEDGCYPK NLDHQQIIEF PDYGDPGLFT EVPAYLYDAM RFGYEYSYDP TEYYPVIDEG 540 LFIA

Sequence ? help Back to Top

Protein Sequence Length: 544 aa Download sequence

MVMENGFSSP RSDAFPVGLR VLVVDDDPTW LRILEKMLKK CSYEVTTCCL AREALSLLRE  60
RKDGYDIVIS DVNMPDMDGF KLLEHVGLEM DLPVIMMSVD GETSRVMKGV QHGACDYLLK  120
PIRMKELRNI WQHVLRKKIQ EGRDIEGHDV LEGIQILRNG SDRYDDSQFL RGEELFSLRK  180
RKDIDKHEDR EFCDTSSTKK ARVVWSVDLH QKFVKAVDHI GFDKVGPKKI LDLMNVPWLT  240
RENVASHLQK YRLYLSRLQK ENDPKACFVV GMKHTDSCSK DRDGNFSLCS SLAGPQTDVT  300
NSSFSFSGDN FLLQNDSSEP KRAAAAARSV PEPIKLAAFD PSKRTCYPWV DAPETKFKQE  360
IKPVVHSEGD FSQFPATVPP HHVQIDQLQS ISSISSGRSA TEKDIASSIE SKPMYSEECS  420
QQMVHVNLPK VATDPSSTTT TPAAATTPLG KKNQSLNLSS ISTDIGSGLP FESFDEDLQG  480
YLLEDGCYPK NLDHQQIIEF PDYGDPGLFT EVPAYLYDAM RFGYEYSYDP TEYYPVIDEG  540
LFIA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67710.1	1e-124	ARR-B family protein