PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023546503.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family BBR-BPC
Protein Properties Length: 322aa    MW: 36007.9 Da    PI: 10.2354
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023546503.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind389.35.7e-11913221301
       GAGA_bind   1 mdddgsre..rnkg.yyepa..aslkenl..glqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllve 88 
                     mdd g+re  r+k+ +y++a  + + +++   +q+m+++aerda+i+ernlalsekkaa+aerdmaflqrd+a+aern+al+erdn++++l++++
  XP_023546503.1   1 MDDGGHREngRHKTdHYKSAqgQWMMQHQpsMKQIMTIMAERDAAIQERNLALSEKKAALAERDMAFLQRDAAIAERNNALLERDNAIATLQYRD 95 
                     9*****9999***999996656445545422469************************************************************* PP

       GAGA_bind  89 nsla...salpvgvqvlsgtksidslqq.lse..pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkak......kkkkks 171
                     nsl     ++p+g+q+ +g+k+i++ qq +    p++++s ++ re++ +ea p++  a+e +++++kk++q++k+  ++++k      k+k+++
  XP_023546503.1  96 NSLPnnsLSCPPGCQIARGVKHIHHPQQhT-VhmPHMNESNYNSREMHPNEASPVSPVASELTKTRRKKRTQEGKTVTTPNKKvskaprKVKREG 189
                     *98777789******************952.346********************99988888888777766665543333222111222333333 PP

       GAGA_bind 172 ekskkkvkkesader.............skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrga 253
                     e+ +          +             +++++k +dl+ln+v++Dest+P+P+CsCtG+ rqCYkWGnGGWqSaCCtttiS+yPLP+++++r+a
  XP_023546503.1 190 EDLN----------KvmvgkahgigndhKQSDWKGQDLGLNQVAFDESTMPAPICSCTGVIRQCYKWGNGGWQSACCTTTISMYPLPAVPNKRHA 274
                     3333..........12233344555555999**************************************************************** PP

       GAGA_bind 254 RiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                     R++grKmS++af+klL++LaaeG+dls pvDLk+ WAkHGtn+++ti+
  XP_023546503.1 275 RLGGRKMSGSAFNKLLNRLAAEGHDLSAPVDLKNNWAKHGTNRYITIK 322
                     ***********************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    
MDDGGHRENG RHKTDHYKSA QGQWMMQHQP SMKQIMTIMA ERDAAIQERN LALSEKKAAL  60
AERDMAFLQR DAAIAERNNA LLERDNAIAT LQYRDNSLPN NSLSCPPGCQ IARGVKHIHH  120
PQQHTVHMPH MNESNYNSRE MHPNEASPVS PVASELTKTR RKKRTQEGKT VTTPNKKVSK  180
APRKVKREGE DLNKVMVGKA HGIGNDHKQS DWKGQDLGLN QVAFDESTMP APICSCTGVI  240
RQCYKWGNGG WQSACCTTTI SMYPLPAVPN KRHARLGGRK MSGSAFNKLL NRLAAEGHDL  300
SAPVDLKNNW AKHGTNRYIT IK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160186RRKKRTQEGKTVTTPNKKVSKAPRKVK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-143BBR-BPC family protein