PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023546642.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

ARF

Protein Properties

Length: 1071aa MW: 117813 Da PI: 6.3868

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023546642.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	72.8	4.3e-23	131	232	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++ XP_023546642.1 131 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVAKDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFI--RDEK 222 99***************************9445444.38********************************************..5688 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 ++l+++++r+ XP_023546642.1 223 QQLLLGIRRA 232 889**997 PP
2	Auxin_resp	118.5	5.6e-39	257	340	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPras+seFvv+++k+ ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdld+vrW++S+Wr+L+ XP_023546642.1 257 AAHAAANNSPFTVFYNPRASPSEFVVPLAKYYKAVSaNQISLGMRFRMMFETEESGTRRYMGTITGISDLDSVRWKGSQWRNLQ 340 79*******************************989******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1071 aa Download sequence
MKTPANGAAA MPNSSEGGLE KKTINPELWQ ACAGPLANLP PAGYHVVYFP QGHSEQVAAS 60 LKKDVDGQVP NYPNLPSKLL CLLHNVTLHA DPETDEVYAQ MTLLPVPSFD KDALLRSDLS 120 LKSNKPQPEF FCKTLTASDT STHGGFSVPR RAAEKIFPPL DFSMQPPAQE LVAKDLHDNV 180 WTFRHIYRGQ PKRHLLTTGW SLFVSGKRLL AGDSVLFIRD EKQQLLLGIR RANRQPTNLS 240 SSVLSTDSMH IGILAAAAHA AANNSPFTVF YNPRASPSEF VVPLAKYYKA VSANQISLGM 300 RFRMMFETEE SGTRRYMGTI TGISDLDSVR WKGSQWRNLQ VGWDESTGGE RRNRVSIWEI 360 EPVIAPFFIC PPPFLRSKRP RQPGMPDDDS SDLDGICKRT MFGDDFCMKD PQGYPGLNLV 420 QWMNMQNPSL SNAMQPSYMH SFSGSMLPNL GGVDISRQLG LSNTQIPQSN NIQFNAQRLL 480 SQAQQLDQLP KLPSSMNSMG SVVQPSQQLD DMSQQTRSNL INQNAVSSQI QAQIMQQQQP 540 HTNGIVLQQN QQLQRSLPQN QSQTMNQSPL PDPMIHQLQM SDNQVPMQML QKLQQQQQQQ 600 QSLLAQQSVV LQPAQLPEQL RQSVDASFSR SMSSNQMLDI PQSTPAAVPP SNVSPQQAAK 660 SNGTTNNRFS NQHMQPKLPQ LHQPPPSTVL SDMSRPVGLP PTQTYNQLSA ATSSVITGAA 720 AAGQSGVTDD IPSCSTSPST NNGPSLIQPV NNGRVHRSTG LVEDVAQSSA TIFSTNTLTA 780 VKPSLNISKN QSHGIFAQQT FLSGVVSQTD FLDTSSSTTS ACLSQNEAQL QQNNVMSFNS 840 QPMLFRDSTQ DLEVPTDLHN IPYGTNVDGP LVAQLNSDPL LNKGIGELGK DFSNNFSSGA 900 MLTTYDAQKD PQQEISSSIV SQSFGIPDMT FNSMDSAMND NAFLNRNQWA PPPPFQRMRT 960 YTKVYKRGAV GRSIDITSYS GYDELKQDLA RRFGIEGQLE DRQKIGWKLV YVDHENDVLL 1020 VGDDPWEDFV NCVRSIKILS PQEVQQMSLD GDFGNGVLLN QACSSSDGGN A

Sequence ? help Back to Top

Protein Sequence Length: 1071 aa Download sequence

MKTPANGAAA MPNSSEGGLE KKTINPELWQ ACAGPLANLP PAGYHVVYFP QGHSEQVAAS  60
LKKDVDGQVP NYPNLPSKLL CLLHNVTLHA DPETDEVYAQ MTLLPVPSFD KDALLRSDLS  120
LKSNKPQPEF FCKTLTASDT STHGGFSVPR RAAEKIFPPL DFSMQPPAQE LVAKDLHDNV  180
WTFRHIYRGQ PKRHLLTTGW SLFVSGKRLL AGDSVLFIRD EKQQLLLGIR RANRQPTNLS  240
SSVLSTDSMH IGILAAAAHA AANNSPFTVF YNPRASPSEF VVPLAKYYKA VSANQISLGM  300
RFRMMFETEE SGTRRYMGTI TGISDLDSVR WKGSQWRNLQ VGWDESTGGE RRNRVSIWEI  360
EPVIAPFFIC PPPFLRSKRP RQPGMPDDDS SDLDGICKRT MFGDDFCMKD PQGYPGLNLV  420
QWMNMQNPSL SNAMQPSYMH SFSGSMLPNL GGVDISRQLG LSNTQIPQSN NIQFNAQRLL  480
SQAQQLDQLP KLPSSMNSMG SVVQPSQQLD DMSQQTRSNL INQNAVSSQI QAQIMQQQQP  540
HTNGIVLQQN QQLQRSLPQN QSQTMNQSPL PDPMIHQLQM SDNQVPMQML QKLQQQQQQQ  600
QSLLAQQSVV LQPAQLPEQL RQSVDASFSR SMSSNQMLDI PQSTPAAVPP SNVSPQQAAK  660
SNGTTNNRFS NQHMQPKLPQ LHQPPPSTVL SDMSRPVGLP PTQTYNQLSA ATSSVITGAA  720
AAGQSGVTDD IPSCSTSPST NNGPSLIQPV NNGRVHRSTG LVEDVAQSSA TIFSTNTLTA  780
VKPSLNISKN QSHGIFAQQT FLSGVVSQTD FLDTSSSTTS ACLSQNEAQL QQNNVMSFNS  840
QPMLFRDSTQ DLEVPTDLHN IPYGTNVDGP LVAQLNSDPL LNKGIGELGK DFSNNFSSGA  900
MLTTYDAQKD PQQEISSSIV SQSFGIPDMT FNSMDSAMND NAFLNRNQWA PPPPFQRMRT  960
YTKVYKRGAV GRSIDITSYS GYDELKQDLA RRFGIEGQLE DRQKIGWKLV YVDHENDVLL  1020
VGDDPWEDFV NCVRSIKILS PQEVQQMSLD GDFGNGVLLN QACSSSDGGN A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein