PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023547050.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 228aa MW: 25902.1 Da PI: 9.1876

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023547050.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.9	1.6e-12	63	114	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ + Lr+++P++ + ++ + a+i+ +++ +++L+ XP_023547050.1 63 QRMTHIAVERNRRKQMNEYLCVLRSMMPSS---YTQRGDQASIVGGTIKLVRELE 114 79**************************...9*************999885 PP

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence
MVLGLESAVF QEDKLIGCGW KNVEAMEAGE FVGGGLRATV APVGKRWGRR GKMVKKREEI 60 EKQRMTHIAV ERNRRKQMNE YLCVLRSMMP SSYTQRGDQA SIVGGTIKLV RELEQLVQWL 120 EGKKQRHEHI CYAGQDYSGE SKVEVRVIES YANIKMRAEN RPNQLLKVAL ELHSLKLLIL 180 HVNVTTIGQM VFYCFSVKIE DGCELSTVGE ITAAVNQMFQ RILTEKGD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	64	75	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22490.1	4e-52	bHLH family protein