PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023547090.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MIKC_MADS
Protein Properties Length: 224aa    MW: 26006.5 Da    PI: 8.4523
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023547090.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.62.9e-271059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    rienk+nr+v+fskR+ g+ KKA+E+SvLCdaev +i+fs++gkl+eyss
  XP_023547090.1 10 RIENKINREVSFSKRKGGLVKKAHEISVLCDAEVGLILFSHKGKLFEYSS 59
                    8***********************************************96 PP
2K-box95.39.4e-32801764100
           K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     ++  s+++  +e l+ e+ +Lk++ie Lqr++ h++GedL+sLs+keL++Le+q++++lk++Rs+Kn+l++++i+ lq+ke+ +qe+n  L k++
  XP_023547090.1  80 QTAASVSKFSQEDLTLEYYRLKSKIELLQRNNSHYMGEDLDSLSVKELHNLEEQMDTALKHVRSRKNQLICDSISILQRKERTIQEQNSLLAKEI 174
                     4445588888999********************************************************************************99 PP

           K-box  99 ee 100
                     +e
  XP_023547090.1 175 KE 176
                     86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    
MGRGRVELRR IENKINREVS FSKRKGGLVK KAHEISVLCD AEVGLILFSH KGKLFEYSSH  60
SSMEKILERY ERYSFVGKQQ TAASVSKFSQ EDLTLEYYRL KSKIELLQRN NSHYMGEDLD  120
SLSVKELHNL EEQMDTALKH VRSRKNQLIC DSISILQRKE RTIQEQNSLL AKEIKEKEKS  180
VAMAEEAEWE EQQHHCYNAL SFLYQSAPHQ PSLNIGLASF DGRQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.12e-84MIKC_MADS family protein