PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023547102.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

GRF

Protein Properties

Length: 650aa MW: 69767.9 Da PI: 8.1067

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023547102.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.9	2.1e-24	240	284	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e+ XP_023547102.1 240 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVES 284 79****************************************986 PP
2	QLQ	62.4	1.2e-21	171	206	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT++Q+++L++Q+l+yKy+ an+PvP++Ll +i+k XP_023547102.1 171 PFTPSQWMELEHQALIYKYITANVPVPSNLLIPIRK 206 9*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 650 aa Download sequence
MDFGVVGLDG VVVVGSSHDT SGFSSLASSD PETKQKWYES GVGFLQKQER SGSGAAAEDE 60 DLRSSKLPKT YDDLSSSSSS TKGLLFPHRQ VASLLRSNSP FFLSDSNQHP HQMLCFSSPK 120 TDPFPPDKTS SLSRVSPNFY HSSAPRNAGC NYGGLNGGSM NGSGFIGVRA PFTPSQWMEL 180 EHQALIYKYI TANVPVPSNL LIPIRKALES AGFSAYSAGF LRPGAVGWGS FNMGFSNNSD 240 PEPGRCRRTD GKKWRCSRDA VADQKYCERH MNRGRHRSRK PVESQAGHSH SVARASNITT 300 AANATKLISS AASAAAVPSN ASSNTLSFAD QHFKNLQCAE SHPPPSTTAQ INRMLITNKE 360 NGSIALHDTP TTSGFSVLSP SIEMKQQPKH LPFAVQKQQN PFEESTRSEF GLVSSNFLLN 420 QSQKASSLMN YRGYNPSEGI SSTQEAAETQ HSLRQFFNNW PKNQSDSSSV SWSNSNLDLQ 480 SDRTQLSISI PMATSDFRSS TSSPANEKVT LSPLKSLQEM DPLQMGLGVG NVMDEPNNRQ 540 ANWIPISWES SMGGPLGEVL HSTNNIGGEL KSSSILNLMT EGWDNNSPSL GSSPTGVLQK 600 TAFGSFSNSS TGSSPRTENN KTHEGGGGGG GGSSQCSDRF VNSSSSLPSV

Sequence ? help Back to Top

Protein Sequence Length: 650 aa Download sequence

MDFGVVGLDG VVVVGSSHDT SGFSSLASSD PETKQKWYES GVGFLQKQER SGSGAAAEDE  60
DLRSSKLPKT YDDLSSSSSS TKGLLFPHRQ VASLLRSNSP FFLSDSNQHP HQMLCFSSPK  120
TDPFPPDKTS SLSRVSPNFY HSSAPRNAGC NYGGLNGGSM NGSGFIGVRA PFTPSQWMEL  180
EHQALIYKYI TANVPVPSNL LIPIRKALES AGFSAYSAGF LRPGAVGWGS FNMGFSNNSD  240
PEPGRCRRTD GKKWRCSRDA VADQKYCERH MNRGRHRSRK PVESQAGHSH SVARASNITT  300
AANATKLISS AASAAAVPSN ASSNTLSFAD QHFKNLQCAE SHPPPSTTAQ INRMLITNKE  360
NGSIALHDTP TTSGFSVLSP SIEMKQQPKH LPFAVQKQQN PFEESTRSEF GLVSSNFLLN  420
QSQKASSLMN YRGYNPSEGI SSTQEAAETQ HSLRQFFNNW PKNQSDSSSV SWSNSNLDLQ  480
SDRTQLSISI PMATSDFRSS TSSPANEKVT LSPLKSLQEM DPLQMGLGVG NVMDEPNNRQ  540
ANWIPISWES SMGGPLGEVL HSTNNIGGEL KSSSILNLMT EGWDNNSPSL GSSPTGVLQK  600
TAFGSFSNSS TGSSPRTENN KTHEGGGGGG GGSSQCSDRF VNSSSSLPSV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	9e-88	GRF family protein