PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023547176.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 162aa MW: 18291.7 Da PI: 10.8068

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023547176.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.2	1.6e-17	18	63	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+++G+++W++Ia++++ gR++k+c++rw++ XP_023547176.1 18 RGHWRPAEDTKLKELVALHGPHNWNLIAHKLQ-GRSGKSCRLRWLNQ 63 899***************************.*********996 PP
2	Myb_DNA-binding	50.4	5.2e-16	70	113	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T++E+e+l +a+ +G++ W+ I+r ++ gRt++ +k++w+ XP_023547176.1 70 RTAFTEQEEERLMQAHGIYGNK-WAVISRLFP-GRTDNGVKNHWHV 113 678*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence
MATETDPTKH SNGSLCGRGH WRPAEDTKLK ELVALHGPHN WNLIAHKLQG RSGKSCRLRW 60 LNQLDPRINR TAFTEQEEER LMQAHGIYGN KWAVISRLFP GRTDNGVKNH WHVIMARKCR 120 QQHIASYTRR NRFSQPPPPP SSGGGLEGGE PAFIDFLGVG GR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69560.1	1e-68	MYB family protein