PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023547289.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

AP2

Protein Properties

Length: 681aa MW: 74059.5 Da PI: 6.9474

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023547289.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	50.9	3.9e-16	311	370	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_023547289.1 311 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 370 78*****************988886678446***********************98 PP
2	AP2	45.9	1.4e-14	413	464	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s ++GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_023547289.1 413 SVFRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 464 689*************988532...5**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 681 aa Download sequence
MKSMNENENN NNNNNNNNNN SSSSWLGFSL SPHMKMEVTA SDHPYNHHHS HSATNAFYLS 60 PHYNNNSEIF YGIAENASLH HSAAASLSVM PLKSDGSLCI MEALSRSQTE GMVPSSSPKL 120 EDFLGGATMG GRGYFNQNAE SEPDREHSLD LLHRPIRENQ QQQILMQNTH QYYSGLVPSS 180 IGIGGCDPQI LPADDDEIPC LRNWVSRSHY AGAHNNLDQQ ITGGGGGALV HDGGSGGNSV 240 SIGGMSCGEL QSLSLSMSPG SQSSSFTASG QISLTGGDGA VVETKKRGPG KLCQKQPVHR 300 KSIDTFGQRT SQYRGVTRHR WTGRYEAHLW DNSCKKEGQT RKGRQVYLGG YDMEEKAARA 360 YDLAALKYWG PSTHINFPLE NYQTELEEMK NMSRQEYVAH LRRKSSGFSR GASVFRGVTR 420 HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI KFRGVNAVTN FDISRYDVER 480 IMASNTLLAG ELARRNKEVV VDPRTDAAAA AAAAAAYDSS VASNNNGGIE MNPDGNGTDW 540 KMALYQNPSH QQHQQGAATC VAESLDHHHN KSMAASGDYP NASFSMALQN LIGIEALNTT 600 NSHGIEDDLN KQVTHFSNSS SLVTSLSSSR EGSPDKTNAS MASKLIGATS GVGSWYPTPQ 660 QLRPTAISMA HLPVFAAWND T

Sequence ? help Back to Top

Protein Sequence Length: 681 aa Download sequence

MKSMNENENN NNNNNNNNNN SSSSWLGFSL SPHMKMEVTA SDHPYNHHHS HSATNAFYLS  60
PHYNNNSEIF YGIAENASLH HSAAASLSVM PLKSDGSLCI MEALSRSQTE GMVPSSSPKL  120
EDFLGGATMG GRGYFNQNAE SEPDREHSLD LLHRPIRENQ QQQILMQNTH QYYSGLVPSS  180
IGIGGCDPQI LPADDDEIPC LRNWVSRSHY AGAHNNLDQQ ITGGGGGALV HDGGSGGNSV  240
SIGGMSCGEL QSLSLSMSPG SQSSSFTASG QISLTGGDGA VVETKKRGPG KLCQKQPVHR  300
KSIDTFGQRT SQYRGVTRHR WTGRYEAHLW DNSCKKEGQT RKGRQVYLGG YDMEEKAARA  360
YDLAALKYWG PSTHINFPLE NYQTELEEMK NMSRQEYVAH LRRKSSGFSR GASVFRGVTR  420
HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI KFRGVNAVTN FDISRYDVER  480
IMASNTLLAG ELARRNKEVV VDPRTDAAAA AAAAAAYDSS VASNNNGGIE MNPDGNGTDW  540
KMALYQNPSH QQHQQGAATC VAESLDHHHN KSMAASGDYP NASFSMALQN LIGIEALNTT  600
NSHGIEDDLN KQVTHFSNSS SLVTSLSSSR EGSPDKTNAS MASKLIGATS GVGSWYPTPQ  660
QLRPTAISMA HLPVFAAWND T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-128	AP2 family protein