PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023547327.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family ARF
Protein Properties Length: 521aa    MW: 57219.4 Da    PI: 6.2798
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023547327.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.94.6e-24101202199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f kvlt+sd+++ g +++p+ +a ++         ++ +  tl ++d +g +W++++iyr++++r++lt+GW++Fv+ ++L +gD+vvF   ++s
  XP_023547327.1 101 FAKVLTSSDANNGGGFSVPRYCAVSIfpplnfqADPPVQ--TLAITDVHGVVWKFRHIYRGTPRRHLLTTGWSKFVNHKKLIAGDSVVFA--KNS 191
                     89*****************************95444444..8************************************************..779 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     ++e++v+++r+
  XP_023547327.1 192 RGEMFVGIRRA 202
                     *********97 PP
2Auxin_resp78.61.5e-26245328183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                     aa+ a++ ++Fevv++Pr + s+Fvv+ve v++++k ++ +G R+k+  eted  ++++ +Gt+++vs  +   W++S+Wr+L+
  XP_023547327.1 245 AAELAAQFKPFEVVFYPRIGLSQFVVPVEIVNNSMKYQWYPGIRVKLPTETEDTLRTQWhQGTIISVSIPEHDPWKGSPWRMLE 328
                     67889999************************************************************999999********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    
MDPKLWRAFA GDLAHLHTVG SEVYYFVQGH VEQATYAPKL SPAVLSNPVS KCLVTGVGLD  60
ADALTDEVLI KINLHPIRPG EGRSEVVSRL GCSEVNVISK FAKVLTSSDA NNGGGFSVPR  120
YCAVSIFPPL NFQADPPVQT LAITDVHGVV WKFRHIYRGT PRRHLLTTGW SKFVNHKKLI  180
AGDSVVFAKN SRGEMFVGIR RARSNRPFTS GECSRVEENP SGDGDPRNFS RRTIGRVPPE  240
VVATAAELAA QFKPFEVVFY PRIGLSQFVV PVEIVNNSMK YQWYPGIRVK LPTETEDTLR  300
TQWHQGTIIS VSIPEHDPWK GSPWRMLEIT WEETDAPPNG KYVCPWEVEL AGPAPPIQPS  360
LHIAKRPRGH SKSGQLNGEA ELFSPMMRVG DSSMEQFNQA LLSFNSFPAG MQGARQNFLC  420
ESGLFDNPYK ETTNAEPSTQ MVSQVVSTDL HIGSAQSDTL SPDSQASVLS FATESADNQL  480
SNSTEAGVTS FQLFGQIIHL NPPPENGANT DDVDMTSNQS D
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-127ARF family protein