PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023547461.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Trihelix

Protein Properties

Length: 329aa MW: 35968.4 Da PI: 5.5362

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023547461.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	86.1	4.2e-27	17	111	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rWt+qe+l+Li++++ e+r+r g+ + +p+W++vs++++++g++r+p+qC+++w+nl++++kkike+e++ +++++s +++ ++l+ XP_023547461.1 17 RWTRQEILVLIQGKKVAETRVRGGRaaslafgsaQVEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWESQIREDTESFWVMRNDLR 111 8*******************76555666666699******************************************999999999999986 PP

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence
MSIDGGDDAT KTPRLPRWTR QEILVLIQGK KVAETRVRGG RAASLAFGSA QVEPKWASVS 60 SYCKRHGVNR GPVQCRKRWS NLAGDFKKIK EWESQIREDT ESFWVMRNDL RRERKLPGFF 120 DKEVYDILDS GPAPSPSPAL ALALAPAPPP ALNSDEVKPD AEPEHVFDSS KIATADDGLF 180 SDFEQDETSR SPMKEVAGKE VPAPTADGAI PAPTPLSEKL YQPAAQDCPV QGTSNDREAA 240 AAANPGIGST SSQEGRKRKH VALDVDEETM VQNELIGILE KNGKLLSAQL EAQNMNFELD 300 REQRKHHADG LVAVLNKLAD ALGRIADKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-113	Trihelix family protein