PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023547745.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

AP2

Protein Properties

Length: 361aa MW: 40718.1 Da PI: 7.9418

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023547745.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	50.6	4.9e-16	49	108	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++ g k+ ++++lg ++ +e Aa a++ a++k++g XP_023547745.1 49 SVYRGVTRHRWTGRYEAHLWDkNCWnEGqnKKgRQVYLGAYDDEEAAAHAYDLAALKYWG 108 78*****************999963367556***********************98 PP
2	AP2	51.2	3.1e-16	151	202	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g XP_023547745.1 151 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 202 89**99******99966...3.6***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MAKISHPPHK NSISTTANSQ SSTVHHSQKK VLKRTRKSTP RDAPAQRSSV YRGVTRHRWT 60 GRYEAHLWDK NCWNEGQNKK GRQVYLGAYD DEEAAAHAYD LAALKYWGTE IVLNFPLLTY 120 QDELKEMEGQ SREEYIGYLR RKSSGFSRGV SKYRGVARHH HNGRWEARIG RVFGNKYLYL 180 GTYATQEEAA TAYDMAAIEY RGLNAVTNFD LSRYIKCLRP EEQDIPNNNN RPPSPNAGKT 240 TSELDPKSLL EFTFPSQCSS SDQPISTPPL GPGGGDSSSS KALELLLHSS KFKDIVERKP 300 TADPPQTPPE SDRPRRCIPD DIQTYFDCTQ DSDDIAEGDD GIFGYLNSFL PSSIFHYALD 360 A

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MAKISHPPHK NSISTTANSQ SSTVHHSQKK VLKRTRKSTP RDAPAQRSSV YRGVTRHRWT  60
GRYEAHLWDK NCWNEGQNKK GRQVYLGAYD DEEAAAHAYD LAALKYWGTE IVLNFPLLTY  120
QDELKEMEGQ SREEYIGYLR RKSSGFSRGV SKYRGVARHH HNGRWEARIG RVFGNKYLYL  180
GTYATQEEAA TAYDMAAIEY RGLNAVTNFD LSRYIKCLRP EEQDIPNNNN RPPSPNAGKT  240
TSELDPKSLL EFTFPSQCSS SDQPISTPPL GPGGGDSSSS KALELLLHSS KFKDIVERKP  300
TADPPQTPPE SDRPRRCIPD DIQTYFDCTQ DSDDIAEGDD GIFGYLNSFL PSSIFHYALD  360
A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16060.1	9e-99	AP2 family protein