PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023548244.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family LBD
Protein Properties Length: 219aa    MW: 23887.7 Da    PI: 4.8188
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023548244.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601132e-35231231100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++Cv+ap f  ++ +++fa+vhk+FGasnv+kll +lp + r++a+ +++yeA  r+rdP +G+v +i++lqq++++l++e+
  XP_023548244.1  23 SCGACKFLRRKCSDQCVFAPLFSYDEaTSHFAAVHKVFGASNVSKLLLHLPMHVRSQAAITVTYEALERMRDPANGCVFHIFALQQEVASLQEEI 117
                     6**********************98868******************************************************************* PP

          DUF260  95 allkee 100
                     + l+++
  XP_023548244.1 118 QILGTQ 123
                     998877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    
MTVLNSYDSS SSSSSSSSSS SSSCGACKFL RRKCSDQCVF APLFSYDEAT SHFAAVHKVF  60
GASNVSKLLL HLPMHVRSQA AITVTYEALE RMRDPANGCV FHIFALQQEV ASLQEEIQIL  120
GTQIANFLTT GAAISAVENP FIEMNDYDFG MNSNHSQNQL LPYQTSDGVQ KDDQMISPLL  180
CLGEKDGGFG FCHSNHVVER SGFDVSVEEN FGGYPWILG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.14e-54LBD family protein