PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023548284.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

LBD

Protein Properties

Length: 234aa MW: 23999.1 Da PI: 8.0829

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023548284.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.8	1e-39	28	128	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC ++C++apyf +eq + +fa+vhk+FGasnv+kll ++p ++r da+ +++ye++ar+rdPvyG+v++i++lqqq+ +l+ael XP_023548284.1 28 PCGACKFLRRKCIPGCIFAPYFDSEQgAGHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYESQARLRDPVYGCVAHIFALQQQVVSLQAEL 122 7*********************9988***************************************************************** PP DUF260 95 allkee 100 ++l+++ XP_023548284.1 123 SYLQAH 128 *99986 PP

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence
MSANPSTSGG GGGSGTAGGG GGGGGGGPCG ACKFLRRKCI PGCIFAPYFD SEQGAGHFAA 60 VHKVFGASNV SKLLLHIPVH KRLDAVVTIC YESQARLRDP VYGCVAHIFA LQQQVVSLQA 120 ELSYLQAHLA TLELPSPPPP PNFAAQPPVS ISDLPSASSL PVTYDLSSLF DPMAQPAWAM 180 QQQRLDHRQF SSGGAGGSST TAGEGDLQAL ARSLLHRHGG PPCSNASSPP SLSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45420.1	1e-70	LBD family protein