PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023548319.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB_related

Protein Properties

Length: 881aa MW: 97769.3 Da PI: 10.2686

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023548319.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30	1.2e-09	15	64	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwq 45 +W t+E++ll++avk++G ++W++++ +++ + t+ +c ++++ XP_023548319.1 15 SWGTWEELLLACAVKRHGFKDWNSVSIEVQsrsslphLLTTARNCELKFL 64 6*****************************66666665556666666665 PP

Sequence ? help Back to Top
Protein Sequence Length: 881 aa Download sequence
MADDKERESE HGTASWGTWE ELLLACAVKR HGFKDWNSVS IEVQSRSSLP HLLTTARNCE 60 LKFLDLKRRF TSCQNGAGIA DNKVDITVPW VDELRKLRVA ELRREVQRYD VSINSLQLKV 120 KKLEEEREQG MSDREASTGK PDLKMESRER RSENDKKLFV EPDHRSGING TVAKPPVVPG 180 EDSDREDFSV NQSNSTGSKS GNRKSTAEND KSETKPEFAG SYRPEQNRRA VEPADPQSDD 240 GSTDTVAKNS TCDISETKKK ETQRVDDSSE LADSEAQSNG GETATRESSE VQSSASLTGR 300 MKRKRLLKKE ISGGSSGNEP RRTPAVKSRP FDEVLQMIRA HKHSSLFESR LQSQETEEYK 360 GMVRQHLDLE TVQAKINSGS YSSSTHAFYR DLLLLFNNVV TFFPKSSRES VAARELRLLV 420 SIEMKKALQV AQIDPSPEVV DSSPTIPSRS KGPDLEGSQS LLAKQKSSVP IIVCRKRSKI 480 SSKLSSTTGL GEKGERSNDD EKIAVDLKSS IKIASTNPVE DQGTTKDSKV KEKPITGARS 540 MRRSNDSATN SSGPTIKKQN TNSGWKPSSG NETETQIPIP IPDKKKSDTV TLEKKRSAAD 600 FLKRIKQNSP AETTTKRNSR GGSSSSLNAE YMGGTSLLSG CEEEHRRDTE MAPKTPRVTR 660 NPDLIRGVGK YSRSKMYHKR GLWAIKAKNG GVFPRHDVKL KADAPAEKSP KFYPADDVKK 720 PLVNKRKARL TKLRASITPG TVLIILAGRF KGKRVVFLKQ LPSGLLLVTG PFKINGVPLR 780 RVNQSYAIAT STKVDISGVN AEKFDDKYFS KEVQKKKKKG EGEFFEAEKE EKSALPADRK 840 DDQKAVDTPL IKSIEGVPEL KAYLAARFSL KAGMKPHELV F

Sequence ? help Back to Top

Protein Sequence Length: 881 aa Download sequence

MADDKERESE HGTASWGTWE ELLLACAVKR HGFKDWNSVS IEVQSRSSLP HLLTTARNCE  60
LKFLDLKRRF TSCQNGAGIA DNKVDITVPW VDELRKLRVA ELRREVQRYD VSINSLQLKV  120
KKLEEEREQG MSDREASTGK PDLKMESRER RSENDKKLFV EPDHRSGING TVAKPPVVPG  180
EDSDREDFSV NQSNSTGSKS GNRKSTAEND KSETKPEFAG SYRPEQNRRA VEPADPQSDD  240
GSTDTVAKNS TCDISETKKK ETQRVDDSSE LADSEAQSNG GETATRESSE VQSSASLTGR  300
MKRKRLLKKE ISGGSSGNEP RRTPAVKSRP FDEVLQMIRA HKHSSLFESR LQSQETEEYK  360
GMVRQHLDLE TVQAKINSGS YSSSTHAFYR DLLLLFNNVV TFFPKSSRES VAARELRLLV  420
SIEMKKALQV AQIDPSPEVV DSSPTIPSRS KGPDLEGSQS LLAKQKSSVP IIVCRKRSKI  480
SSKLSSTTGL GEKGERSNDD EKIAVDLKSS IKIASTNPVE DQGTTKDSKV KEKPITGARS  540
MRRSNDSATN SSGPTIKKQN TNSGWKPSSG NETETQIPIP IPDKKKSDTV TLEKKRSAAD  600
FLKRIKQNSP AETTTKRNSR GGSSSSLNAE YMGGTSLLSG CEEEHRRDTE MAPKTPRVTR  660
NPDLIRGVGK YSRSKMYHKR GLWAIKAKNG GVFPRHDVKL KADAPAEKSP KFYPADDVKK  720
PLVNKRKARL TKLRASITPG TVLIILAGRF KGKRVVFLKQ LPSGLLLVTG PFKINGVPLR  780
RVNQSYAIAT STKVDISGVN AEKFDDKYFS KEVQKKKKKG EGEFFEAEKE EKSALPADRK  840
DDQKAVDTPL IKSIEGVPEL KAYLAARFSL KAGMKPHELV F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44430.1	5e-99	MYB_related family protein