PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023548347.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 317aa MW: 35220.8 Da PI: 6.3296

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023548347.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.3	8.5e-11	146	194	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+r++ e+Er+RR+++N++f L +++P+ +++Ka+ L Av YI+ L XP_023548347.1 146 RKRNNVEAERQRREKLNKRFYALLSVVPNV-----SRMDKASLLWDAVSYINAL 194 688999*********************6.....4*************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence
HGLPRRSFCS GAAVWLTGPD ELERYDCQRA KEAKSQGIQT LLCVPAPFGV LEFASRQIIP 60 EDWGLVQQVK SVLESDIPNF RNSSSPLPLL EQDVNLEEIG FLSEAPEEEV GRPGRGKSRR 120 TESAGELELS DSDSPVGKAA GKRRGRKRNN VEAERQRREK LNKRFYALLS VVPNVSRMDK 180 ASLLWDAVSY INALKGKVEE MELELEVRKL KRGGGEGVEK QSTTTSEEEE EQGKGSTLFD 240 VEVKRMGGGD AMVRVESHNQ NCPSATLMGA LRDLEVHIHH ANITNVNDLM LQHVLIKLPH 300 AFSTDEAFKA SLLSKLH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	148	158	RNNVEAERQRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46830.1	7e-45	bHLH family protein