PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023548501.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Trihelix

Protein Properties

Length: 377aa MW: 41398.4 Da PI: 10.4145

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023548501.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.3	6.3e-16	69	156	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +Li+a e+ +l+rg+lk+++W+ev++ + +++ r+ +qCk++++ ++k+yk +k+ + + s++p++d+l+ XP_023548501.1 69 CWSEGATSVLIDAWGERYLELSRGNLKQKHWKEVADIVssreDYTKIPRTDIQCKNRIDTVKKKYKTEKAKLTAG--GGPSKWPFYDRLD 156 7***********************************87666677899********************97..67778***997 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MKEDDEIQSF PSPGSGSPAS PISNGRITVT VAAAAPPPPP SALNTITLAL PIQQSKGGGG 60 GGGSGREDCW SEGATSVLID AWGERYLELS RGNLKQKHWK EVADIVSSRE DYTKIPRTDI 120 QCKNRIDTVK KKYKTEKAKL TAGGGPSKWP FYDRLDLLIG PAASKNSVSI AGANPPLQPN 180 QKVPLGIPVV NRPVNPYQAQ QNHNHSQQQQ QKGPKAQKIQ YHKRPRTTDS DSSGSDRETS 240 PTSSDSYRQK KVQSKNVRVQ KEVVNPKLAQ VGKTEKGKNG SREKGWVNAV SELTQAIMKF 300 GEAYEQAESS KLQQVVVMEK QRMKFAKDLE LQRMQFFMKT QLEISQLKHG RRVVAAGNHH 360 GSNNNNNNNH SNSDSSN

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MKEDDEIQSF PSPGSGSPAS PISNGRITVT VAAAAPPPPP SALNTITLAL PIQQSKGGGG  60
GGGSGREDCW SEGATSVLID AWGERYLELS RGNLKQKHWK EVADIVSSRE DYTKIPRTDI  120
QCKNRIDTVK KKYKTEKAKL TAGGGPSKWP FYDRLDLLIG PAASKNSVSI AGANPPLQPN  180
QKVPLGIPVV NRPVNPYQAQ QNHNHSQQQQ QKGPKAQKIQ YHKRPRTTDS DSSGSDRETS  240
PTSSDSYRQK KVQSKNVRVQ KEVVNPKLAQ VGKTEKGKNG SREKGWVNAV SELTQAIMKF  300
GEAYEQAESS KLQQVVVMEK QRMKFAKDLE LQRMQFFMKT QLEISQLKHG RRVVAAGNHH  360
GSNNNNNNNH SNSDSSN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	7e-51	Trihelix family protein