PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023548502.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family ARR-B
Protein Properties Length: 671aa    MW: 74607 Da    PI: 6.2497
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023548502.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.52.6e-27227280155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gL++e+v+SHLQkYRl
  XP_023548502.1 227 KPRVVWSVELHQQFVIAVDQL-GIDKAVPKKILELMNVPGLSRENVASHLQKYRL 280
                     79*******************.********************************8 PP
2Myb_DNA-binding35.91.8e-11229279148
                      TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                      r  W+ e+++++v av qlG +   +k+I + m+  g++++++ s++qky+
   XP_023548502.1 229 RVVWSVELHQQFVIAVDQLGIDkaVPKKILELMNvPGLSRENVASHLQKYR 279
                      678***********************************************7 PP
3Response_reg72.41.8e-24491571109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vdD+p+ +++l+++l++  y  v+ +  +e al +l+e++  +D++l D+ mp+mdG++ll++   e  +lp+i+++a + ++ + + +  G
  XP_023548502.1  49 VLVVDDDPTCLRILEKMLQNCCY-AVTKCNRAEIALSMLRENKngFDIVLSDVHMPDMDGFKLLEQVGLEM-DLPVIMMSADDGKNVVMKGVIHG 141
                     89*********************.***************999999**********************6644.8********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+ +e+l++
  XP_023548502.1 142 ACDYLIKPVRIEALRN 157
                     *************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    
MALFCLWGYL SLWGMDPSHT KGMMPTSTSI SARKAADMGC DQFPAGLRVL VVDDDPTCLR  60
ILEKMLQNCC YAVTKCNRAE IALSMLRENK NGFDIVLSDV HMPDMDGFKL LEQVGLEMDL  120
PVIMMSADDG KNVVMKGVIH GACDYLIKPV RIEALRNIWQ HVVRKRKSEW KDLEQSGSMD  180
DGDRDQNVSE GANYSSSAYD GSWNSSKRKR DAEEELEERD DTSTLKKPRV VWSVELHQQF  240
VIAVDQLGID KAVPKKILEL MNVPGLSREN VASHLQKYRL YLRRLSGVSP HPSNLNNSFM  300
NPQDHPPFGS MASSYNGIDL QTLLVTGQLS PQSLAALQAT GLRRPTVKST LPMALVDQNN  360
IFSFENPKLR FGEDQTQHLN NTKPVSLFHG IPTKMEPKQL ANMQHPSVQT QRNMNMNMNM  420
PLNIKSEHGG TQLMHLSQQQ TVGQTLNNST VAHHLPGIPS TLRNPIISGS VTTGNGTADN  480
SHVPRYNLVS PTSVMVNYPM SQTTEVFQEE MNSNLKVSSG VMSSYGVFSD LHMQKSHDWD  540
SQNVSTLAFG TPHHGNFIHH SFDISPSSLI HHGFPSSQTN GENHNSSVNG KTNFSFLDST  600
QPGIPQSVAH NSFFDPGEVK NQIIPDASYQ TDLLSEDFGQ DELLGVFLKQ EQQEDNGSVD  660
FSGYKTENIC V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-159ARR-B family protein