PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023548628.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Protein Properties

Length: 696aa MW: 77372.5 Da PI: 6.3934

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023548628.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	66.5	3.9e-21	554	651	2	96
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 +kvl++sdv+++gr+vlpkk ae+h +++ + ++ + +ed ++r+W+++++y ++ks++y+l+ ++ +Fv+angL+egDf+v++ ++ +++ XP_023548628.1 554 QKVLKQSDVGNLGRIVLPKKEAETHlpELEARDGISIAMEDiGTSRVWNMRYRYwpNNKSRMYLLE-NTGDFVRANGLQEGDFIVIY--SDvKCG 645 79***********************999999****7778*****777777777777.******************..566999 PP ..EEEE CS B3 91 elvvkv 96 +++++ XP_023548628.1 646 KYMIRG 651 888765 PP

Sequence ? help Back to Top
Protein Sequence Length: 696 aa Download sequence
MKEIHDLDLH AEMDQTQMWV HDQNQQEQEQ QHQNHQIFLS DNDDDALMFY SDFPPLPDFP 60 CMSSSSSSTP APVKPTVSLS SSSSTSSSSS ATSWAVLKSD ADEIAEEIRI NDDNSTTTAA 120 AAVSSPTAVK TEFNGGDCTD DMMMETFGYM DLLEDSNEFF DPTCIFQNEQ QQQQRDPLED 180 LQLESFEEVE MEDLMMMHGG ESNDNGGKQN VAAVAAVAAA AAEEEDLAKV FLEWLRSNRE 240 TVSADDLRNV RIKKATIESA ARRLGGGKEG MKQLLKLVLE WVQTNHLHKR KFKEINENEA 300 NLIGFQNPNS SGHPWIQTPP PLPPPPLYSP PILGYVQGGG GEAYGGGRGY SDHYQLLDSS 360 LSWSNSNSNS NLRGQFGLSP SHFNSFVDNF VAGPPLPPPQ PQGFAAGYGR GQQYPYMGQY 420 FQGHGGDNGL VRLDSSATKE ARKKRMARQR RFSAHHRHNH GGHHGNHHHH HGNSHQNQMN 480 PNATDHCNMA TTSQPNAGNW VYWPSSTDVV PADSPVHAVN RSNSSLQNQP YPPRIQSDRR 540 QGWKPEKNLR FLLQKVLKQS DVGNLGRIVL PKKEAETHLP ELEARDGISI AMEDIGTSRV 600 WNMRYRYWPN NKSRMYLLEN TGDFVRANGL QEGDFIVIYS DVKCGKYMIR GVKVRQPGSK 660 PDSKRGGKSQ RSHSTAGVNA NGLSSSPPTP ATPRRL

Sequence ? help Back to Top

Protein Sequence Length: 696 aa Download sequence

MKEIHDLDLH AEMDQTQMWV HDQNQQEQEQ QHQNHQIFLS DNDDDALMFY SDFPPLPDFP  60
CMSSSSSSTP APVKPTVSLS SSSSTSSSSS ATSWAVLKSD ADEIAEEIRI NDDNSTTTAA  120
AAVSSPTAVK TEFNGGDCTD DMMMETFGYM DLLEDSNEFF DPTCIFQNEQ QQQQRDPLED  180
LQLESFEEVE MEDLMMMHGG ESNDNGGKQN VAAVAAVAAA AAEEEDLAKV FLEWLRSNRE  240
TVSADDLRNV RIKKATIESA ARRLGGGKEG MKQLLKLVLE WVQTNHLHKR KFKEINENEA  300
NLIGFQNPNS SGHPWIQTPP PLPPPPLYSP PILGYVQGGG GEAYGGGRGY SDHYQLLDSS  360
LSWSNSNSNS NLRGQFGLSP SHFNSFVDNF VAGPPLPPPQ PQGFAAGYGR GQQYPYMGQY  420
FQGHGGDNGL VRLDSSATKE ARKKRMARQR RFSAHHRHNH GGHHGNHHHH HGNSHQNQMN  480
PNATDHCNMA TTSQPNAGNW VYWPSSTDVV PADSPVHAVN RSNSSLQNQP YPPRIQSDRR  540
QGWKPEKNLR FLLQKVLKQS DVGNLGRIVL PKKEAETHLP ELEARDGISI AMEDIGTSRV  600
WNMRYRYWPN NKSRMYLLEN TGDFVRANGL QEGDFIVIYS DVKCGKYMIR GVKVRQPGSK  660
PDSKRGGKSQ RSHSTAGVNA NGLSSSPPTP ATPRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24650.1	2e-93	B3 family protein