PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023548629.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Protein Properties

Length: 684aa MW: 75939.9 Da PI: 6.5121

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023548629.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	66.5	3.8e-21	542	639	2	96
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 +kvl++sdv+++gr+vlpkk ae+h +++ + ++ + +ed ++r+W+++++y ++ks++y+l+ ++ +Fv+angL+egDf+v++ ++ +++ XP_023548629.1 542 QKVLKQSDVGNLGRIVLPKKEAETHlpELEARDGISIAMEDiGTSRVWNMRYRYwpNNKSRMYLLE-NTGDFVRANGLQEGDFIVIY--SDvKCG 633 79***********************999999****7778*****777777777777.******************..566999 PP ..EEEE CS B3 91 elvvkv 96 +++++ XP_023548629.1 634 KYMIRG 639 888765 PP

Sequence ? help Back to Top
Protein Sequence Length: 684 aa Download sequence
MDQTQMWVHD QNQQEQEQQH QNHQIFLSDN DDDALMFYSD FPPLPDFPCM SSSSSSTPAP 60 VKPTVSLSSS SSTSSSSSAT SWAVLKSDAD EIAEEIRIND DNSTTTAAAA VSSPTAVKTE 120 FNGGDCTDDM MMETFGYMDL LEDSNEFFDP TCIFQNEQQQ QQRDPLEDLQ LESFEEVEME 180 DLMMMHGGES NDNGGKQNVA AVAAVAAAAA EEEDLAKVFL EWLRSNRETV SADDLRNVRI 240 KKATIESAAR RLGGGKEGMK QLLKLVLEWV QTNHLHKRKF KEINENEANL IGFQNPNSSG 300 HPWIQTPPPL PPPPLYSPPI LGYVQGGGGE AYGGGRGYSD HYQLLDSSLS WSNSNSNSNL 360 RGQFGLSPSH FNSFVDNFVA GPPLPPPQPQ GFAAGYGRGQ QYPYMGQYFQ GHGGDNGLVR 420 LDSSATKEAR KKRMARQRRF SAHHRHNHGG HHGNHHHHHG NSHQNQMNPN ATDHCNMATT 480 SQPNAGNWVY WPSSTDVVPA DSPVHAVNRS NSSLQNQPYP PRIQSDRRQG WKPEKNLRFL 540 LQKVLKQSDV GNLGRIVLPK KEAETHLPEL EARDGISIAM EDIGTSRVWN MRYRYWPNNK 600 SRMYLLENTG DFVRANGLQE GDFIVIYSDV KCGKYMIRGV KVRQPGSKPD SKRGGKSQRS 660 HSTAGVNANG LSSSPPTPAT PRRL

Sequence ? help Back to Top

Protein Sequence Length: 684 aa Download sequence

MDQTQMWVHD QNQQEQEQQH QNHQIFLSDN DDDALMFYSD FPPLPDFPCM SSSSSSTPAP  60
VKPTVSLSSS SSTSSSSSAT SWAVLKSDAD EIAEEIRIND DNSTTTAAAA VSSPTAVKTE  120
FNGGDCTDDM MMETFGYMDL LEDSNEFFDP TCIFQNEQQQ QQRDPLEDLQ LESFEEVEME  180
DLMMMHGGES NDNGGKQNVA AVAAVAAAAA EEEDLAKVFL EWLRSNRETV SADDLRNVRI  240
KKATIESAAR RLGGGKEGMK QLLKLVLEWV QTNHLHKRKF KEINENEANL IGFQNPNSSG  300
HPWIQTPPPL PPPPLYSPPI LGYVQGGGGE AYGGGRGYSD HYQLLDSSLS WSNSNSNSNL  360
RGQFGLSPSH FNSFVDNFVA GPPLPPPQPQ GFAAGYGRGQ QYPYMGQYFQ GHGGDNGLVR  420
LDSSATKEAR KKRMARQRRF SAHHRHNHGG HHGNHHHHHG NSHQNQMNPN ATDHCNMATT  480
SQPNAGNWVY WPSSTDVVPA DSPVHAVNRS NSSLQNQPYP PRIQSDRRQG WKPEKNLRFL  540
LQKVLKQSDV GNLGRIVLPK KEAETHLPEL EARDGISIAM EDIGTSRVWN MRYRYWPNNK  600
SRMYLLENTG DFVRANGLQE GDFIVIYSDV KCGKYMIRGV KVRQPGSKPD SKRGGKSQRS  660
HSTAGVNANG LSSSPPTPAT PRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24650.1	2e-93	B3 family protein